Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26035 and BPHYT_RS26040 are separated by 2 nucleotides BPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26045 and BPHYT_RS26050 are separated by 1 nucleotides
BPHYT_RS26035: BPHYT_RS26035 - ABC transporter ATP-binding protein, at 1,415,807 to 1,417,417
_RS26035
BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112
_RS26040
BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091
_RS26045
BPHYT_RS26050: BPHYT_RS26050 - ABC transporter permease, at 1,419,093 to 1,420,208
_RS26050
Position (kb) 1417
1418
1419 Strain fitness (log2 ratio) -2
-1
0
1 at 1416.918 kb on - strand, within BPHYT_RS26035 at 1416.939 kb on + strand, within BPHYT_RS26035 at 1416.940 kb on - strand, within BPHYT_RS26035 at 1417.417 kb on + strand at 1417.418 kb on - strand at 1417.489 kb on - strand at 1417.995 kb on - strand, within BPHYT_RS26040 at 1418.118 kb on - strand at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.284 kb on - strand, within BPHYT_RS26045 at 1419.092 kb on - strand at 1419.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 1,416,918 - BPHYT_RS26035 0.69 -0.6 1,416,939 + BPHYT_RS26035 0.70 -1.9 1,416,940 - BPHYT_RS26035 0.70 -0.3 1,417,417 + -0.3 1,417,418 - +0.5 1,417,489 - -0.3 1,417,995 - BPHYT_RS26040 0.83 +0.9 1,418,118 - +0.0 1,418,278 - BPHYT_RS26045 0.11 -0.6 1,418,278 - BPHYT_RS26045 0.11 -0.5 1,418,284 - BPHYT_RS26045 0.12 +0.7 1,419,092 - +0.4 1,419,092 - -0.1
Or see this region's nucleotide sequence