Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26030

Experiment: 24hr PHYTO1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS26020 and BPHYT_RS26025 are separated by 35 nucleotidesBPHYT_RS26025 and BPHYT_RS26030 overlap by 10 nucleotidesBPHYT_RS26030 and BPHYT_RS26035 overlap by 4 nucleotides BPHYT_RS26020: BPHYT_RS26020 - GntR family transcriptional regulator, at 1,413,935 to 1,414,693 _RS26020 BPHYT_RS26025: BPHYT_RS26025 - hypothetical protein, at 1,414,729 to 1,415,124 _RS26025 BPHYT_RS26030: BPHYT_RS26030 - cysteine hydrolase, at 1,415,115 to 1,415,810 _RS26030 BPHYT_RS26035: BPHYT_RS26035 - ABC transporter ATP-binding protein, at 1,415,807 to 1,417,417 _RS26035 Position (kb) 1415 1416Strain fitness (log2 ratio) -1 0 1 2 3at 1414.372 kb on + strand, within BPHYT_RS26020at 1415.070 kb on - strand, within BPHYT_RS26025at 1415.236 kb on + strand, within BPHYT_RS26030at 1415.588 kb on + strand, within BPHYT_RS26030at 1415.588 kb on + strand, within BPHYT_RS26030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
remove
1,414,372 + BPHYT_RS26020 0.58 -0.3
1,415,070 - BPHYT_RS26025 0.86 +1.8
1,415,236 + BPHYT_RS26030 0.17 +3.3
1,415,588 + BPHYT_RS26030 0.68 +0.8
1,415,588 + BPHYT_RS26030 0.68 +0.3

Or see this region's nucleotide sequence