Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25945

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25935 and BPHYT_RS25940 are separated by 235 nucleotidesBPHYT_RS25940 and BPHYT_RS25945 are separated by 227 nucleotidesBPHYT_RS25945 and BPHYT_RS25950 are separated by 122 nucleotides BPHYT_RS25935: BPHYT_RS25935 - type III secretion protein, at 1,394,329 to 1,396,242 _RS25935 BPHYT_RS25940: BPHYT_RS25940 - arylsulfate sulfotransferase, at 1,396,478 to 1,396,732 _RS25940 BPHYT_RS25945: BPHYT_RS25945 - hypothetical protein, at 1,396,960 to 1,397,223 _RS25945 BPHYT_RS25950: BPHYT_RS25950 - sensor histidine kinase, at 1,397,346 to 1,398,806 _RS25950 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -2 -1 0 1at 1396.166 kb on - strandat 1396.966 kb on + strandat 1397.199 kb on + strandat 1397.200 kb on - strandat 1397.241 kb on + strandat 1397.652 kb on - strand, within BPHYT_RS25950at 1397.745 kb on + strand, within BPHYT_RS25950at 1397.776 kb on + strand, within BPHYT_RS25950

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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1,396,166 - +0.7
1,396,966 + -0.3
1,397,199 + +1.7
1,397,200 - -0.7
1,397,241 + +1.3
1,397,652 - BPHYT_RS25950 0.21 -0.4
1,397,745 + BPHYT_RS25950 0.27 -2.0
1,397,776 + BPHYT_RS25950 0.29 -0.9

Or see this region's nucleotide sequence