Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25575

Experiment: 24hr PHYTO1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25570 and BPHYT_RS25575 are separated by 495 nucleotidesBPHYT_RS25575 and BPHYT_RS25580 are separated by 93 nucleotidesBPHYT_RS25580 and BPHYT_RS25585 are separated by 258 nucleotides BPHYT_RS25570: BPHYT_RS25570 - hypothetical protein, at 1,309,144 to 1,309,389 _RS25570 BPHYT_RS25575: BPHYT_RS25575 - alpha/beta hydrolase, at 1,309,885 to 1,310,751 _RS25575 BPHYT_RS25580: BPHYT_RS25580 - membrane protein, at 1,310,845 to 1,311,318 _RS25580 BPHYT_RS25585: BPHYT_RS25585 - membrane protein, at 1,311,577 to 1,311,888 _RS25585 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1at 1308.964 kb on - strandat 1309.536 kb on - strandat 1309.872 kb on + strandat 1310.071 kb on - strand, within BPHYT_RS25575at 1310.876 kb on + strandat 1311.335 kb on + strandat 1311.338 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
remove
1,308,964 - +0.3
1,309,536 - +0.1
1,309,872 + -0.1
1,310,071 - BPHYT_RS25575 0.21 -2.2
1,310,876 + -0.0
1,311,335 + -1.8
1,311,338 - -0.1

Or see this region's nucleotide sequence