Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23665 and BPHYT_RS23670 are separated by 64 nucleotides BPHYT_RS23670 and BPHYT_RS23675 are separated by 153 nucleotides BPHYT_RS23675 and BPHYT_RS23680 are separated by 71 nucleotides BPHYT_RS23680 and BPHYT_RS23685 are separated by 139 nucleotides BPHYT_RS23685 and BPHYT_RS23690 are separated by 96 nucleotides
BPHYT_RS23665: BPHYT_RS23665 - hypothetical protein, at 880,190 to 880,423
_RS23665
BPHYT_RS23670: BPHYT_RS23670 - AsnC family transcriptional regulator, at 880,488 to 880,955
_RS23670
BPHYT_RS23675: BPHYT_RS23675 - lysine transporter LysE, at 881,109 to 881,762
_RS23675
BPHYT_RS23680: BPHYT_RS23680 - Fe-S protein, at 881,834 to 882,007
_RS23680
BPHYT_RS23685: BPHYT_RS23685 - membrane protein, at 882,147 to 882,467
_RS23685
BPHYT_RS23690: BPHYT_RS23690 - hypothetical protein, at 882,564 to 883,073
_RS23690
Position (kb) 881
882 Strain fitness (log2 ratio) -2
-1
0
1
2 at 880.472 kb on + strand at 880.473 kb on - strand at 880.546 kb on - strand, within BPHYT_RS23670 at 880.634 kb on - strand, within BPHYT_RS23670 at 880.634 kb on - strand, within BPHYT_RS23670 at 880.651 kb on - strand, within BPHYT_RS23670 at 880.741 kb on + strand, within BPHYT_RS23670 at 880.959 kb on + strand at 880.959 kb on + strand at 880.960 kb on - strand at 880.963 kb on + strand at 880.963 kb on + strand at 880.964 kb on - strand at 881.084 kb on - strand at 881.136 kb on + strand at 881.136 kb on + strand at 881.136 kb on + strand at 881.137 kb on - strand at 881.137 kb on - strand at 881.138 kb on + strand at 881.139 kb on - strand at 881.160 kb on + strand at 881.326 kb on - strand, within BPHYT_RS23675 at 882.029 kb on - strand at 882.034 kb on - strand at 882.087 kb on + strand at 882.097 kb on - strand at 882.111 kb on + strand at 882.321 kb on + strand, within BPHYT_RS23685 at 882.322 kb on - strand, within BPHYT_RS23685 at 882.343 kb on - strand, within BPHYT_RS23685 at 882.566 kb on - strand at 882.566 kb on - strand at 882.629 kb on - strand, within BPHYT_RS23690 at 882.649 kb on + strand, within BPHYT_RS23690 at 882.680 kb on - strand, within BPHYT_RS23690
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 880,472 + -0.1 880,473 - -0.3 880,546 - BPHYT_RS23670 0.12 -0.2 880,634 - BPHYT_RS23670 0.31 -0.5 880,634 - BPHYT_RS23670 0.31 +0.7 880,651 - BPHYT_RS23670 0.35 -0.5 880,741 + BPHYT_RS23670 0.54 -1.4 880,959 + +0.2 880,959 + +0.7 880,960 - +0.1 880,963 + -0.6 880,963 + -1.3 880,964 - -0.2 881,084 - -0.7 881,136 + -1.1 881,136 + +0.1 881,136 + +0.3 881,137 - -0.1 881,137 - -0.6 881,138 + -0.5 881,139 - -0.2 881,160 + +1.4 881,326 - BPHYT_RS23675 0.33 -2.2 882,029 - +0.7 882,034 - -0.3 882,087 + +0.2 882,097 - +0.4 882,111 + +2.5 882,321 + BPHYT_RS23685 0.54 -0.3 882,322 - BPHYT_RS23685 0.55 -0.7 882,343 - BPHYT_RS23685 0.61 +1.3 882,566 - +0.5 882,566 - -0.7 882,629 - BPHYT_RS23690 0.13 -1.3 882,649 + BPHYT_RS23690 0.17 -0.4 882,680 - BPHYT_RS23690 0.23 -0.8
Or see this region's nucleotide sequence