Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22355

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22355 and BPHYT_RS22360 are separated by 352 nucleotides BPHYT_RS22355: BPHYT_RS22355 - HAD family hydrolase, at 571,955 to 572,629 _RS22355 BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944 _RS22360 Position (kb) 571 572 573Strain fitness (log2 ratio) -2 -1 0 1at 570.964 kb on - strandat 571.054 kb on + strandat 571.143 kb on - strandat 571.143 kb on - strandat 571.493 kb on + strandat 571.494 kb on - strandat 571.536 kb on + strandat 571.568 kb on + strandat 571.922 kb on - strandat 572.196 kb on - strand, within BPHYT_RS22355at 572.382 kb on - strand, within BPHYT_RS22355at 572.627 kb on + strandat 572.720 kb on + strandat 572.723 kb on + strandat 572.724 kb on - strandat 572.724 kb on - strandat 572.726 kb on - strandat 572.796 kb on - strandat 572.828 kb on + strandat 572.829 kb on - strandat 572.872 kb on + strandat 572.982 kb on - strandat 573.052 kb on - strandat 573.541 kb on - strand, within BPHYT_RS22360at 573.541 kb on - strand, within BPHYT_RS22360

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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570,964 - -0.3
571,054 + -0.1
571,143 - +0.2
571,143 - -0.8
571,493 + -0.1
571,494 - -1.7
571,536 + -0.9
571,568 + +0.1
571,922 - -0.4
572,196 - BPHYT_RS22355 0.36 -1.4
572,382 - BPHYT_RS22355 0.63 +1.5
572,627 + -0.5
572,720 + -0.5
572,723 + -0.6
572,724 - -0.7
572,724 - +0.9
572,726 - -0.1
572,796 - -0.7
572,828 + +0.2
572,829 - -0.7
572,872 + +0.0
572,982 - +1.0
573,052 - +0.5
573,541 - BPHYT_RS22360 0.58 -2.6
573,541 - BPHYT_RS22360 0.58 +0.3

Or see this region's nucleotide sequence