Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17085 and BPHYT_RS17090 are separated by 187 nucleotides BPHYT_RS17090 and BPHYT_RS17095 are separated by 12 nucleotides BPHYT_RS17095 and BPHYT_RS17100 are separated by 314 nucleotides
BPHYT_RS17085: BPHYT_RS17085 - hypoxanthine phosphoribosyltransferase, at 3,873,313 to 3,873,864
_RS17085
BPHYT_RS17090: BPHYT_RS17090 - membrane protein, at 3,874,052 to 3,874,651
_RS17090
BPHYT_RS17095: BPHYT_RS17095 - proline--tRNA ligase, at 3,874,664 to 3,876,400
_RS17095
BPHYT_RS17100: BPHYT_RS17100 - RNA pyrophosphohydrolase, at 3,876,715 to 3,877,455
_RS17100
Position (kb)
3874
3875
3876
3877 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3873.757 kb on + strand, within BPHYT_RS17085 at 3873.758 kb on - strand, within BPHYT_RS17085 at 3873.784 kb on + strand, within BPHYT_RS17085 at 3873.784 kb on + strand, within BPHYT_RS17085 at 3873.785 kb on - strand, within BPHYT_RS17085 at 3873.862 kb on + strand at 3874.027 kb on + strand at 3874.644 kb on + strand at 3874.644 kb on + strand at 3874.645 kb on - strand at 3874.645 kb on - strand at 3875.133 kb on + strand, within BPHYT_RS17095 at 3875.859 kb on + strand, within BPHYT_RS17095 at 3875.860 kb on - strand, within BPHYT_RS17095 at 3875.880 kb on + strand, within BPHYT_RS17095 at 3875.881 kb on - strand, within BPHYT_RS17095 at 3876.028 kb on - strand, within BPHYT_RS17095 at 3876.281 kb on - strand at 3876.281 kb on - strand at 3876.282 kb on + strand at 3876.282 kb on + strand at 3876.282 kb on + strand at 3876.283 kb on - strand at 3876.283 kb on - strand at 3876.408 kb on - strand at 3876.506 kb on + strand at 3876.507 kb on - strand at 3876.507 kb on - strand at 3876.507 kb on - strand at 3876.668 kb on + strand at 3876.676 kb on + strand at 3876.679 kb on - strand at 3876.693 kb on + strand at 3876.714 kb on + strand at 3876.875 kb on + strand, within BPHYT_RS17100 at 3876.875 kb on + strand, within BPHYT_RS17100 at 3876.978 kb on - strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.145 kb on - strand, within BPHYT_RS17100 at 3877.167 kb on - strand, within BPHYT_RS17100 at 3877.329 kb on - strand, within BPHYT_RS17100
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 3,873,757 + BPHYT_RS17085 0.80 -0.0 3,873,758 - BPHYT_RS17085 0.81 -0.2 3,873,784 + BPHYT_RS17085 0.85 +0.3 3,873,784 + BPHYT_RS17085 0.85 -0.5 3,873,785 - BPHYT_RS17085 0.86 -0.8 3,873,862 + -2.5 3,874,027 + -0.3 3,874,644 + +1.6 3,874,644 + +0.0 3,874,645 - +2.0 3,874,645 - -0.9 3,875,133 + BPHYT_RS17095 0.27 +0.6 3,875,859 + BPHYT_RS17095 0.69 +0.9 3,875,860 - BPHYT_RS17095 0.69 +1.0 3,875,880 + BPHYT_RS17095 0.70 +1.1 3,875,881 - BPHYT_RS17095 0.70 -0.1 3,876,028 - BPHYT_RS17095 0.79 +1.6 3,876,281 - +0.1 3,876,281 - +0.2 3,876,282 + +0.3 3,876,282 + +0.2 3,876,282 + -0.5 3,876,283 - +0.8 3,876,283 - +1.1 3,876,408 - +1.7 3,876,506 + +1.5 3,876,507 - +1.2 3,876,507 - -1.7 3,876,507 - -0.8 3,876,668 + +1.1 3,876,676 + +1.4 3,876,679 - +1.0 3,876,693 + +2.9 3,876,714 + +1.5 3,876,875 + BPHYT_RS17100 0.22 +0.2 3,876,875 + BPHYT_RS17100 0.22 +0.6 3,876,978 - BPHYT_RS17100 0.35 +2.2 3,877,142 + BPHYT_RS17100 0.58 +0.6 3,877,142 + BPHYT_RS17100 0.58 +0.6 3,877,142 + BPHYT_RS17100 0.58 +1.9 3,877,142 + BPHYT_RS17100 0.58 +0.8 3,877,142 + BPHYT_RS17100 0.58 +4.2 3,877,142 + BPHYT_RS17100 0.58 +0.4 3,877,142 + BPHYT_RS17100 0.58 +2.2 3,877,143 - BPHYT_RS17100 0.58 +2.2 3,877,143 - BPHYT_RS17100 0.58 +0.6 3,877,143 - BPHYT_RS17100 0.58 +0.9 3,877,144 + BPHYT_RS17100 0.58 +2.1 3,877,144 + BPHYT_RS17100 0.58 +1.7 3,877,144 + BPHYT_RS17100 0.58 -0.1 3,877,145 - BPHYT_RS17100 0.58 +2.8 3,877,167 - BPHYT_RS17100 0.61 -1.1 3,877,329 - BPHYT_RS17100 0.83 +1.2
Or see this region's nucleotide sequence