Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12845

Experiment: 24hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO1 MOI 1
2,928,680	-				+2.8
2,928,680	-		BPHYT_RS12840	0.76	+1.3
2,928,866	-		BPHYT_RS12840	0.83	+1.3
2,929,130	-				+2.6
2,929,300	+				+2.0
2,929,348	+				+0.7
2,929,349	-				-0.3
2,929,412	+				+0.7
2,929,544	-				+0.6
2,929,578	+				+0.9
2,929,721	-				+1.4
2,929,822	+				+1.4
2,929,822	+				+2.5
2,929,979	+		BPHYT_RS12845	0.15	+1.6
2,929,980	-		BPHYT_RS12845	0.15	+1.3
2,929,980	-		BPHYT_RS12845	0.15	+2.0
2,929,980	-				+2.3
2,929,980	-		BPHYT_RS12845	0.15	+1.8
2,929,980	-		BPHYT_RS12845	0.15	+1.9
2,929,980	-		BPHYT_RS12845	0.15	+1.1
2,929,992	-		BPHYT_RS12845	0.15	+1.6
2,929,992	-		BPHYT_RS12845	0.15	+1.5
2,930,117	-		BPHYT_RS12845	0.20	+0.1
2,930,147	+		BPHYT_RS12845	0.21	+3.1
2,930,147	+		BPHYT_RS12845	0.21	+1.3
2,930,148	-		BPHYT_RS12845	0.21	+2.1
2,930,148	-		BPHYT_RS12845	0.21	+1.6
2,930,169	-		BPHYT_RS12845	0.22	+1.4
2,930,366	+		BPHYT_RS12845	0.30	-1.3
2,930,366	+				+1.3
2,930,367	-		BPHYT_RS12845	0.30	+2.5
2,930,367	-		BPHYT_RS12845	0.30	+1.6
2,930,367	-		BPHYT_RS12845	0.30	+1.2
2,930,367	-		BPHYT_RS12845	0.30	+1.0
2,930,415	-		BPHYT_RS12845	0.32	+1.5
2,930,841	-		BPHYT_RS12845	0.49	+1.5
2,930,841	-		BPHYT_RS12845	0.49	+1.6
2,931,038	+		BPHYT_RS12845	0.57	+0.9
2,931,039	-		BPHYT_RS12845	0.57	-0.1
2,931,131	-		BPHYT_RS12845	0.61	+2.5
2,931,143	+		BPHYT_RS12845	0.61	+0.7
2,931,143	+		BPHYT_RS12845	0.61	+1.8
2,931,143	+		BPHYT_RS12845	0.61	+1.6
2,931,143	+		BPHYT_RS12845	0.61	+1.6
2,931,144	-		BPHYT_RS12845	0.61	+1.8
2,931,144	-		BPHYT_RS12845	0.61	+1.6
2,931,144	-		BPHYT_RS12845	0.61	+2.3
2,931,144	-		BPHYT_RS12845	0.61	+3.7
2,931,144	-		BPHYT_RS12845	0.61	+2.0
2,931,242	+		BPHYT_RS12845	0.65	+1.6
2,931,242	+		BPHYT_RS12845	0.65	+0.7
2,931,430	+		BPHYT_RS12845	0.72	+1.6
2,931,430	+		BPHYT_RS12845	0.72	+1.7
2,931,431	-		BPHYT_RS12845	0.72	+1.6
2,931,431	-		BPHYT_RS12845	0.72	+1.5
2,931,431	-		BPHYT_RS12845	0.72	+1.5
2,931,434	+		BPHYT_RS12845	0.73	+1.6
2,931,434	+		BPHYT_RS12845	0.73	+1.7
2,931,435	-		BPHYT_RS12845	0.73	+1.3
2,931,435	-		BPHYT_RS12845	0.73	+1.9
2,931,460	+		BPHYT_RS12845	0.74	+1.0
2,931,701	+		BPHYT_RS12845	0.83	+2.3
2,931,701	+		BPHYT_RS12845	0.83	+2.2
2,931,701	+		BPHYT_RS12845	0.83	+0.9
2,931,701	+		BPHYT_RS12845	0.83	+2.5
2,931,701	+		BPHYT_RS12845	0.83	+1.3
2,931,906	-				+2.0
2,932,119	+				+2.1
2,932,119	+				+1.3
2,932,119	+				+0.8
2,932,120	-				+1.5
2,932,125	+				+2.6
2,932,763	-				+0.7
2,932,854	-				+0.1
2,932,892	+				+0.9