Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10095

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10090 and BPHYT_RS10095 are separated by 165 nucleotidesBPHYT_RS10095 and BPHYT_RS10100 are separated by 103 nucleotides BPHYT_RS10090: BPHYT_RS10090 - hypothetical protein, at 2,297,647 to 2,298,561 _RS10090 BPHYT_RS10095: BPHYT_RS10095 - integrase, at 2,298,727 to 2,299,932 _RS10095 BPHYT_RS10100: BPHYT_RS10100 - dihydroxy-acid dehydratase, at 2,300,036 to 2,301,898 _RS10100 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -1 0 1at 2298.622 kb on + strandat 2298.883 kb on + strand, within BPHYT_RS10095at 2298.883 kb on + strand, within BPHYT_RS10095at 2299.327 kb on + strand, within BPHYT_RS10095at 2299.844 kb on - strandat 2300.103 kb on + strandat 2300.922 kb on - strand, within BPHYT_RS10100

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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2,298,622 + +0.3
2,298,883 + BPHYT_RS10095 0.13 -0.6
2,298,883 + BPHYT_RS10095 0.13 +0.5
2,299,327 + BPHYT_RS10095 0.50 -0.9
2,299,844 - +0.1
2,300,103 + -0.2
2,300,922 - BPHYT_RS10100 0.48 +0.1

Or see this region's nucleotide sequence