Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07145

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07140 and BPHYT_RS07145 are separated by 297 nucleotidesBPHYT_RS07145 and BPHYT_RS07150 are separated by 304 nucleotides BPHYT_RS07140: BPHYT_RS07140 - hypothetical protein, at 1,618,160 to 1,619,344 _RS07140 BPHYT_RS07145: BPHYT_RS07145 - DNA-binding protein, at 1,619,642 to 1,620,217 _RS07145 BPHYT_RS07150: BPHYT_RS07150 - TonB-dependent receptor, at 1,620,522 to 1,623,266 _RS07150 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -2 -1 0 1at 1618.923 kb on - strand, within BPHYT_RS07140at 1619.238 kb on - strandat 1619.684 kb on - strandat 1620.105 kb on + strand, within BPHYT_RS07145at 1621.117 kb on - strand, within BPHYT_RS07150

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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1,618,923 - BPHYT_RS07140 0.64 +1.6
1,619,238 - +0.0
1,619,684 - -0.3
1,620,105 + BPHYT_RS07145 0.80 +0.6
1,621,117 - BPHYT_RS07150 0.22 -1.8

Or see this region's nucleotide sequence