Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04945

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04930 and BPHYT_RS04935 are separated by 4 nucleotidesBPHYT_RS04935 and BPHYT_RS04940 are separated by 72 nucleotidesBPHYT_RS04940 and BPHYT_RS04945 are separated by 22 nucleotidesBPHYT_RS04945 and BPHYT_RS04950 are separated by 28 nucleotides BPHYT_RS04930: BPHYT_RS04930 - segregation and condensation protein A, at 1,131,909 to 1,132,784 _RS04930 BPHYT_RS04935: BPHYT_RS04935 - hypothetical protein, at 1,132,789 to 1,132,974 _RS04935 BPHYT_RS04940: BPHYT_RS04940 - hypothetical protein, at 1,133,047 to 1,133,277 _RS04940 BPHYT_RS04945: BPHYT_RS04945 - membrane protein, at 1,133,300 to 1,135,135 _RS04945 BPHYT_RS04950: BPHYT_RS04950 - hypothetical protein, at 1,135,164 to 1,139,495 _RS04950 Position (kb) 1133 1134 1135 1136Strain fitness (log2 ratio) -1 0 1 2 3at 1133.049 kb on - strandat 1133.124 kb on + strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.234 kb on - strand, within BPHYT_RS04940at 1133.376 kb on + strandat 1133.469 kb on - strandat 1133.633 kb on + strand, within BPHYT_RS04945at 1133.634 kb on - strand, within BPHYT_RS04945at 1133.634 kb on - strand, within BPHYT_RS04945at 1133.665 kb on + strand, within BPHYT_RS04945at 1133.888 kb on + strand, within BPHYT_RS04945at 1133.889 kb on - strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.906 kb on + strand, within BPHYT_RS04945at 1133.907 kb on - strand, within BPHYT_RS04945at 1133.907 kb on - strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.963 kb on + strand, within BPHYT_RS04945at 1133.964 kb on - strand, within BPHYT_RS04945at 1133.964 kb on - strand, within BPHYT_RS04945at 1134.003 kb on + strand, within BPHYT_RS04945at 1134.004 kb on - strand, within BPHYT_RS04945at 1134.071 kb on + strand, within BPHYT_RS04945at 1134.125 kb on + strand, within BPHYT_RS04945at 1134.125 kb on + strand, within BPHYT_RS04945at 1134.203 kb on + strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.204 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strandat 1134.210 kb on - strand, within BPHYT_RS04945at 1134.210 kb on - strand, within BPHYT_RS04945at 1134.236 kb on + strandat 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.272 kb on + strand, within BPHYT_RS04945at 1134.279 kb on - strand, within BPHYT_RS04945at 1134.394 kb on + strand, within BPHYT_RS04945at 1134.394 kb on + strand, within BPHYT_RS04945at 1134.394 kb on + strand, within BPHYT_RS04945at 1134.395 kb on - strand, within BPHYT_RS04945at 1134.395 kb on - strand, within BPHYT_RS04945at 1134.410 kb on + strand, within BPHYT_RS04945at 1134.410 kb on + strand, within BPHYT_RS04945at 1134.410 kb on + strand, within BPHYT_RS04945at 1134.439 kb on + strand, within BPHYT_RS04945at 1134.439 kb on + strand, within BPHYT_RS04945at 1134.439 kb on + strand, within BPHYT_RS04945at 1134.440 kb on - strand, within BPHYT_RS04945at 1134.443 kb on + strand, within BPHYT_RS04945at 1134.443 kb on + strand, within BPHYT_RS04945at 1134.443 kb on + strand, within BPHYT_RS04945at 1134.444 kb on - strand, within BPHYT_RS04945at 1134.444 kb on - strand, within BPHYT_RS04945at 1134.495 kb on - strand, within BPHYT_RS04945at 1134.495 kb on - strand, within BPHYT_RS04945at 1134.500 kb on + strand, within BPHYT_RS04945at 1134.500 kb on + strand, within BPHYT_RS04945at 1134.512 kb on + strand, within BPHYT_RS04945at 1134.512 kb on + strand, within BPHYT_RS04945at 1134.512 kb on + strand, within BPHYT_RS04945at 1134.512 kb on + strand, within BPHYT_RS04945at 1134.512 kb on + strand, within BPHYT_RS04945at 1134.516 kb on - strand, within BPHYT_RS04945at 1134.598 kb on + strand, within BPHYT_RS04945at 1134.599 kb on - strand, within BPHYT_RS04945at 1134.699 kb on - strand, within BPHYT_RS04945at 1134.716 kb on + strand, within BPHYT_RS04945at 1134.717 kb on - strand, within BPHYT_RS04945at 1134.863 kb on - strand, within BPHYT_RS04945at 1134.868 kb on + strand, within BPHYT_RS04945at 1134.869 kb on - strand, within BPHYT_RS04945at 1134.869 kb on - strand, within BPHYT_RS04945at 1134.902 kb on + strand, within BPHYT_RS04945at 1134.902 kb on + strand, within BPHYT_RS04945at 1134.902 kb on + strand, within BPHYT_RS04945at 1134.902 kb on + strand, within BPHYT_RS04945at 1134.902 kb on + strand, within BPHYT_RS04945at 1134.903 kb on - strand, within BPHYT_RS04945at 1134.903 kb on - strand, within BPHYT_RS04945at 1134.927 kb on - strand, within BPHYT_RS04945at 1135.014 kb on - strandat 1135.079 kb on + strandat 1135.109 kb on + strandat 1135.110 kb on - strandat 1135.211 kb on + strandat 1135.342 kb on - strandat 1135.342 kb on - strandat 1135.468 kb on + strandat 1135.469 kb on - strandat 1135.469 kb on - strandat 1135.469 kb on - strandat 1135.569 kb on + strandat 1135.570 kb on - strandat 1135.570 kb on - strandat 1135.799 kb on + strand, within BPHYT_RS04950at 1136.001 kb on - strand, within BPHYT_RS04950

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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1,133,049 - +0.4
1,133,124 + BPHYT_RS04940 0.33 -1.0
1,133,234 - BPHYT_RS04940 0.81 +2.0
1,133,234 - BPHYT_RS04940 0.81 +1.5
1,133,234 - BPHYT_RS04940 0.81 +1.9
1,133,376 + +0.0
1,133,469 - +1.8
1,133,633 + BPHYT_RS04945 0.18 +1.0
1,133,634 - BPHYT_RS04945 0.18 +2.0
1,133,634 - BPHYT_RS04945 0.18 +1.6
1,133,665 + BPHYT_RS04945 0.20 +1.3
1,133,888 + BPHYT_RS04945 0.32 +2.0
1,133,889 - BPHYT_RS04945 0.32 +1.9
1,133,906 + BPHYT_RS04945 0.33 +1.8
1,133,906 + BPHYT_RS04945 0.33 +1.3
1,133,906 + BPHYT_RS04945 0.33 +2.0
1,133,907 - BPHYT_RS04945 0.33 +2.7
1,133,907 - BPHYT_RS04945 0.33 +2.3
1,133,963 + BPHYT_RS04945 0.36 +1.6
1,133,963 + BPHYT_RS04945 0.36 +1.2
1,133,963 + BPHYT_RS04945 0.36 +1.7
1,133,964 - BPHYT_RS04945 0.36 +0.9
1,133,964 - BPHYT_RS04945 0.36 +0.6
1,134,003 + BPHYT_RS04945 0.38 +1.1
1,134,004 - BPHYT_RS04945 0.38 +1.8
1,134,071 + BPHYT_RS04945 0.42 +1.7
1,134,125 + BPHYT_RS04945 0.45 +1.8
1,134,125 + BPHYT_RS04945 0.45 +1.2
1,134,203 + BPHYT_RS04945 0.49 +2.2
1,134,204 - BPHYT_RS04945 0.49 +1.7
1,134,204 - BPHYT_RS04945 0.49 +0.9
1,134,204 - BPHYT_RS04945 0.49 +1.9
1,134,210 - BPHYT_RS04945 0.50 +1.5
1,134,210 - +0.7
1,134,210 - BPHYT_RS04945 0.50 +1.9
1,134,210 - BPHYT_RS04945 0.50 +1.3
1,134,236 + +2.7
1,134,272 + BPHYT_RS04945 0.53 +1.8
1,134,272 + BPHYT_RS04945 0.53 +1.1
1,134,272 + BPHYT_RS04945 0.53 +1.4
1,134,272 + BPHYT_RS04945 0.53 +1.1
1,134,272 + BPHYT_RS04945 0.53 +1.5
1,134,272 + BPHYT_RS04945 0.53 +1.4
1,134,279 - BPHYT_RS04945 0.53 +0.5
1,134,394 + BPHYT_RS04945 0.60 +1.4
1,134,394 + BPHYT_RS04945 0.60 +1.8
1,134,394 + BPHYT_RS04945 0.60 +1.8
1,134,395 - BPHYT_RS04945 0.60 +1.0
1,134,395 - BPHYT_RS04945 0.60 +1.6
1,134,410 + BPHYT_RS04945 0.60 +1.3
1,134,410 + BPHYT_RS04945 0.60 +1.0
1,134,410 + BPHYT_RS04945 0.60 +1.0
1,134,439 + BPHYT_RS04945 0.62 +1.4
1,134,439 + BPHYT_RS04945 0.62 +1.2
1,134,439 + BPHYT_RS04945 0.62 +1.4
1,134,440 - BPHYT_RS04945 0.62 +1.0
1,134,443 + BPHYT_RS04945 0.62 +1.8
1,134,443 + BPHYT_RS04945 0.62 +1.3
1,134,443 + BPHYT_RS04945 0.62 +2.0
1,134,444 - BPHYT_RS04945 0.62 +2.0
1,134,444 - BPHYT_RS04945 0.62 +2.2
1,134,495 - BPHYT_RS04945 0.65 +1.4
1,134,495 - BPHYT_RS04945 0.65 +1.2
1,134,500 + BPHYT_RS04945 0.65 +1.4
1,134,500 + BPHYT_RS04945 0.65 +1.9
1,134,512 + BPHYT_RS04945 0.66 +2.1
1,134,512 + BPHYT_RS04945 0.66 +0.7
1,134,512 + BPHYT_RS04945 0.66 +1.2
1,134,512 + BPHYT_RS04945 0.66 +1.4
1,134,512 + BPHYT_RS04945 0.66 +1.9
1,134,516 - BPHYT_RS04945 0.66 +1.9
1,134,598 + BPHYT_RS04945 0.71 +1.2
1,134,599 - BPHYT_RS04945 0.71 +1.7
1,134,699 - BPHYT_RS04945 0.76 +1.4
1,134,716 + BPHYT_RS04945 0.77 +1.3
1,134,717 - BPHYT_RS04945 0.77 +1.3
1,134,863 - BPHYT_RS04945 0.85 +1.0
1,134,868 + BPHYT_RS04945 0.85 +1.8
1,134,869 - BPHYT_RS04945 0.85 +1.7
1,134,869 - BPHYT_RS04945 0.85 +1.7
1,134,902 + BPHYT_RS04945 0.87 +1.4
1,134,902 + BPHYT_RS04945 0.87 +1.9
1,134,902 + BPHYT_RS04945 0.87 +2.0
1,134,902 + BPHYT_RS04945 0.87 +1.8
1,134,902 + BPHYT_RS04945 0.87 +1.7
1,134,903 - BPHYT_RS04945 0.87 +1.3
1,134,903 - BPHYT_RS04945 0.87 +1.7
1,134,927 - BPHYT_RS04945 0.89 +3.5
1,135,014 - +1.3
1,135,079 + +1.8
1,135,109 + +1.9
1,135,110 - +1.5
1,135,211 + +1.4
1,135,342 - +1.4
1,135,342 - +1.0
1,135,468 + +1.0
1,135,469 - +1.5
1,135,469 - +1.6
1,135,469 - +1.4
1,135,569 + +1.4
1,135,570 - +1.3
1,135,570 - +1.2
1,135,799 + BPHYT_RS04950 0.15 +2.0
1,136,001 - BPHYT_RS04950 0.19 +1.2

Or see this region's nucleotide sequence