Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04430

Experiment: 24hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04425 and BPHYT_RS04430 are separated by 938 nucleotidesBPHYT_RS04430 and BPHYT_RS04435 are separated by 29 nucleotides BPHYT_RS04425: BPHYT_RS04425 - UDP-phosphate galactose phosphotransferase, at 1,022,373 to 1,023,236 _RS04425 BPHYT_RS04430: BPHYT_RS04430 - amino acid ABC transporter ATPase, at 1,024,175 to 1,024,909 _RS04430 BPHYT_RS04435: BPHYT_RS04435 - ABC transporter, at 1,024,939 to 1,026,879 _RS04435 Position (kb) 1024 1025Strain fitness (log2 ratio) -1 0 1at 1023.269 kb on - strandat 1023.757 kb on - strandat 1023.815 kb on + strandat 1023.893 kb on + strandat 1024.268 kb on + strand, within BPHYT_RS04430at 1024.735 kb on + strand, within BPHYT_RS04430at 1024.905 kb on - strandat 1025.558 kb on + strand, within BPHYT_RS04435at 1025.558 kb on + strand, within BPHYT_RS04435at 1025.559 kb on - strand, within BPHYT_RS04435

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
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1,023,269 - -0.7
1,023,757 - +0.7
1,023,815 + +1.5
1,023,893 + +0.7
1,024,268 + BPHYT_RS04430 0.13 -0.3
1,024,735 + BPHYT_RS04430 0.76 +1.1
1,024,905 - -0.0
1,025,558 + BPHYT_RS04435 0.32 +0.1
1,025,558 + BPHYT_RS04435 0.32 -0.1
1,025,559 - BPHYT_RS04435 0.32 -0.5

Or see this region's nucleotide sequence