Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03620

Experiment: 24hr PHYTO1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS03610 and BPHYT_RS03615 overlap by 4 nucleotidesBPHYT_RS03615 and BPHYT_RS03620 are separated by 48 nucleotidesBPHYT_RS03620 and BPHYT_RS03625 overlap by 4 nucleotidesBPHYT_RS03625 and BPHYT_RS03630 overlap by 8 nucleotides BPHYT_RS03610: BPHYT_RS03610 - deoxyadenosine kinase, at 821,360 to 822,040 _RS03610 BPHYT_RS03615: BPHYT_RS03615 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 822,037 to 822,585 _RS03615 BPHYT_RS03620: BPHYT_RS03620 - poly(A) polymerase, at 822,634 to 824,223 _RS03620 BPHYT_RS03625: BPHYT_RS03625 - Histidinol-phosphatase (EC:3.1.3.15) (from data), at 824,220 to 824,906 _RS03625 BPHYT_RS03630: BPHYT_RS03630 - DnaA regulatory inactivator Hda, at 824,899 to 825,669 _RS03630 Position (kb) 822 823 824 825Strain fitness (log2 ratio) -2 -1 0 1 2at 821.834 kb on - strand, within BPHYT_RS03610at 822.089 kb on - strandat 822.089 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.818 kb on - strand, within BPHYT_RS03620at 822.818 kb on - strand, within BPHYT_RS03620at 822.818 kb on - strand, within BPHYT_RS03620at 822.818 kb on - strand, within BPHYT_RS03620at 822.890 kb on + strand, within BPHYT_RS03620at 823.131 kb on + strand, within BPHYT_RS03620at 823.132 kb on - strand, within BPHYT_RS03620at 823.444 kb on + strand, within BPHYT_RS03620at 823.444 kb on + strand, within BPHYT_RS03620at 823.445 kb on - strand, within BPHYT_RS03620at 823.542 kb on - strand, within BPHYT_RS03620at 823.572 kb on - strand, within BPHYT_RS03620at 823.572 kb on - strand, within BPHYT_RS03620at 823.572 kb on - strand, within BPHYT_RS03620at 823.574 kb on + strand, within BPHYT_RS03620at 823.575 kb on - strand, within BPHYT_RS03620at 823.575 kb on - strand, within BPHYT_RS03620at 823.575 kb on - strand, within BPHYT_RS03620at 823.575 kb on - strand, within BPHYT_RS03620at 824.198 kb on - strandat 824.354 kb on - strand, within BPHYT_RS03625at 824.359 kb on + strand, within BPHYT_RS03625at 824.359 kb on + strand, within BPHYT_RS03625at 824.467 kb on + strand, within BPHYT_RS03625at 824.468 kb on - strand, within BPHYT_RS03625at 824.637 kb on + strand, within BPHYT_RS03625at 824.638 kb on - strand, within BPHYT_RS03625at 824.665 kb on + strand, within BPHYT_RS03625at 824.665 kb on + strand, within BPHYT_RS03625at 824.665 kb on + strand, within BPHYT_RS03625at 824.701 kb on + strand, within BPHYT_RS03625at 824.701 kb on + strand, within BPHYT_RS03625at 824.764 kb on + strand, within BPHYT_RS03625at 824.764 kb on + strand, within BPHYT_RS03625at 824.919 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1
remove
821,834 - BPHYT_RS03610 0.70 -0.4
822,089 - -0.3
822,089 - -1.4
822,631 - +0.2
822,631 - +0.1
822,631 - +0.1
822,818 - BPHYT_RS03620 0.12 +0.3
822,818 - BPHYT_RS03620 0.12 +0.1
822,818 - BPHYT_RS03620 0.12 +0.2
822,818 - BPHYT_RS03620 0.12 -0.1
822,890 + BPHYT_RS03620 0.16 +1.2
823,131 + BPHYT_RS03620 0.31 +0.8
823,132 - BPHYT_RS03620 0.31 +0.9
823,444 + BPHYT_RS03620 0.51 +1.3
823,444 + BPHYT_RS03620 0.51 +1.9
823,445 - BPHYT_RS03620 0.51 +1.2
823,542 - BPHYT_RS03620 0.57 +0.4
823,572 - BPHYT_RS03620 0.59 +0.7
823,572 - BPHYT_RS03620 0.59 +1.0
823,572 - BPHYT_RS03620 0.59 +1.3
823,574 + BPHYT_RS03620 0.59 +0.7
823,575 - BPHYT_RS03620 0.59 +0.8
823,575 - BPHYT_RS03620 0.59 +0.4
823,575 - BPHYT_RS03620 0.59 +1.5
823,575 - BPHYT_RS03620 0.59 +0.5
824,198 - +0.5
824,354 - BPHYT_RS03625 0.20 -0.3
824,359 + BPHYT_RS03625 0.20 +0.4
824,359 + BPHYT_RS03625 0.20 +0.3
824,467 + BPHYT_RS03625 0.36 -0.2
824,468 - BPHYT_RS03625 0.36 +0.1
824,637 + BPHYT_RS03625 0.61 +0.8
824,638 - BPHYT_RS03625 0.61 -0.2
824,665 + BPHYT_RS03625 0.65 +0.7
824,665 + BPHYT_RS03625 0.65 +1.2
824,665 + BPHYT_RS03625 0.65 +0.8
824,701 + BPHYT_RS03625 0.70 +1.1
824,701 + BPHYT_RS03625 0.70 +0.8
824,764 + BPHYT_RS03625 0.79 +1.3
824,764 + BPHYT_RS03625 0.79 +1.1
824,919 + -2.2

Or see this region's nucleotide sequence