Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02630 and BPHYT_RS02635 are separated by 313 nucleotides BPHYT_RS02635 and BPHYT_RS02640 are separated by 66 nucleotides BPHYT_RS02640 and BPHYT_RS02645 are separated by 44 nucleotides
BPHYT_RS02630: BPHYT_RS02630 - amidophosphoribosyltransferase, at 593,879 to 594,844
_RS02630
BPHYT_RS02635: BPHYT_RS02635 - membrane protein, at 595,158 to 595,631
_RS02635
BPHYT_RS02640: BPHYT_RS02640 - cytochrome C oxidase, at 595,698 to 597,332
_RS02640
BPHYT_RS02645: BPHYT_RS02645 - cytochrome oxidase subunit I, at 597,377 to 598,990
_RS02645
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -1
0
1
2 at 594.997 kb on - strand at 594.998 kb on + strand at 594.999 kb on - strand at 594.999 kb on - strand at 595.067 kb on + strand at 595.067 kb on + strand at 595.067 kb on + strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.068 kb on - strand at 595.073 kb on - strand at 595.073 kb on - strand at 595.073 kb on - strand at 595.251 kb on + strand, within BPHYT_RS02635 at 595.252 kb on - strand, within BPHYT_RS02635 at 595.252 kb on - strand, within BPHYT_RS02635 at 595.257 kb on + strand, within BPHYT_RS02635 at 595.257 kb on + strand, within BPHYT_RS02635 at 595.257 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.375 kb on + strand, within BPHYT_RS02635 at 595.376 kb on - strand, within BPHYT_RS02635 at 595.376 kb on - strand, within BPHYT_RS02635 at 595.376 kb on - strand, within BPHYT_RS02635 at 595.376 kb on - strand, within BPHYT_RS02635 at 595.376 kb on - strand, within BPHYT_RS02635 at 595.376 kb on - strand at 595.376 kb on - strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.377 kb on + strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.378 kb on - strand, within BPHYT_RS02635 at 595.399 kb on - strand, within BPHYT_RS02635 at 595.629 kb on + strand at 595.629 kb on + strand at 595.630 kb on - strand at 595.637 kb on + strand at 595.637 kb on + strand at 595.637 kb on + strand at 595.639 kb on - strand at 595.721 kb on + strand at 595.722 kb on - strand at 595.944 kb on + strand, within BPHYT_RS02640 at 595.944 kb on + strand, within BPHYT_RS02640 at 595.944 kb on + strand, within BPHYT_RS02640 at 595.944 kb on + strand, within BPHYT_RS02640 at 595.945 kb on - strand, within BPHYT_RS02640 at 595.945 kb on - strand, within BPHYT_RS02640 at 596.158 kb on - strand, within BPHYT_RS02640 at 596.158 kb on - strand, within BPHYT_RS02640 at 596.250 kb on + strand, within BPHYT_RS02640 at 596.250 kb on + strand, within BPHYT_RS02640 at 596.250 kb on + strand, within BPHYT_RS02640 at 596.251 kb on - strand, within BPHYT_RS02640 at 596.251 kb on - strand, within BPHYT_RS02640 at 596.251 kb on - strand, within BPHYT_RS02640 at 596.340 kb on + strand, within BPHYT_RS02640 at 596.340 kb on + strand, within BPHYT_RS02640 at 596.340 kb on + strand, within BPHYT_RS02640 at 596.340 kb on + strand, within BPHYT_RS02640 at 596.341 kb on - strand, within BPHYT_RS02640 at 596.488 kb on + strand, within BPHYT_RS02640 at 596.488 kb on + strand, within BPHYT_RS02640 at 596.489 kb on - strand, within BPHYT_RS02640 at 596.489 kb on - strand, within BPHYT_RS02640 at 596.489 kb on - strand, within BPHYT_RS02640 at 596.506 kb on - strand, within BPHYT_RS02640 at 596.572 kb on - strand, within BPHYT_RS02640 at 596.611 kb on - strand, within BPHYT_RS02640 at 596.611 kb on - strand, within BPHYT_RS02640 at 596.799 kb on + strand, within BPHYT_RS02640 at 596.808 kb on - strand, within BPHYT_RS02640 at 597.036 kb on + strand, within BPHYT_RS02640 at 597.036 kb on + strand, within BPHYT_RS02640 at 597.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 594,997 - +0.6 594,998 + +0.2 594,999 - +1.3 594,999 - +0.8 595,067 + -0.4 595,067 + -0.0 595,067 + +0.3 595,068 - +2.3 595,068 - +0.6 595,068 - +1.0 595,068 - +0.7 595,068 - +0.3 595,068 - +0.8 595,068 - -0.2 595,068 - +1.1 595,068 - +0.8 595,068 - +1.1 595,073 - +1.1 595,073 - +1.3 595,073 - +1.1 595,251 + BPHYT_RS02635 0.20 -0.3 595,252 - BPHYT_RS02635 0.20 +1.5 595,252 - BPHYT_RS02635 0.20 +2.1 595,257 + BPHYT_RS02635 0.21 -0.7 595,257 + BPHYT_RS02635 0.21 -0.2 595,257 + BPHYT_RS02635 0.21 -0.5 595,375 + BPHYT_RS02635 0.46 +0.2 595,375 + BPHYT_RS02635 0.46 -0.8 595,375 + BPHYT_RS02635 0.46 -0.0 595,375 + +2.3 595,375 + BPHYT_RS02635 0.46 -0.1 595,375 + BPHYT_RS02635 0.46 -0.1 595,375 + BPHYT_RS02635 0.46 -1.0 595,375 + BPHYT_RS02635 0.46 -1.5 595,375 + BPHYT_RS02635 0.46 -0.1 595,376 - BPHYT_RS02635 0.46 +1.5 595,376 - BPHYT_RS02635 0.46 +0.4 595,376 - BPHYT_RS02635 0.46 +1.5 595,376 - BPHYT_RS02635 0.46 +1.5 595,376 - BPHYT_RS02635 0.46 +1.2 595,376 - +2.2 595,376 - BPHYT_RS02635 0.46 +1.2 595,377 + BPHYT_RS02635 0.46 +0.6 595,377 + BPHYT_RS02635 0.46 -0.2 595,377 + BPHYT_RS02635 0.46 +0.4 595,377 + -0.0 595,377 + BPHYT_RS02635 0.46 -0.4 595,377 + BPHYT_RS02635 0.46 +0.2 595,377 + BPHYT_RS02635 0.46 +0.6 595,377 + BPHYT_RS02635 0.46 -1.2 595,377 + BPHYT_RS02635 0.46 +0.8 595,378 - BPHYT_RS02635 0.46 +1.6 595,378 - BPHYT_RS02635 0.46 +1.0 595,378 - BPHYT_RS02635 0.46 +1.0 595,378 - BPHYT_RS02635 0.46 +1.5 595,378 - BPHYT_RS02635 0.46 +1.6 595,378 - BPHYT_RS02635 0.46 +1.4 595,378 - BPHYT_RS02635 0.46 +1.6 595,378 - BPHYT_RS02635 0.46 +1.2 595,378 - BPHYT_RS02635 0.46 +1.0 595,378 - BPHYT_RS02635 0.46 +1.2 595,378 - BPHYT_RS02635 0.46 +1.5 595,378 - +0.8 595,378 - BPHYT_RS02635 0.46 +1.4 595,378 - BPHYT_RS02635 0.46 +1.0 595,378 - BPHYT_RS02635 0.46 +0.7 595,378 - BPHYT_RS02635 0.46 +1.4 595,378 - BPHYT_RS02635 0.46 +0.9 595,378 - BPHYT_RS02635 0.46 +1.0 595,378 - BPHYT_RS02635 0.46 +1.5 595,378 - BPHYT_RS02635 0.46 +1.5 595,378 - BPHYT_RS02635 0.46 +1.6 595,399 - BPHYT_RS02635 0.51 +1.3 595,629 + -0.7 595,629 + -1.6 595,630 - +0.9 595,637 + -0.3 595,637 + -0.0 595,637 + -0.8 595,639 - +1.5 595,721 + +1.5 595,722 - +2.5 595,944 + BPHYT_RS02640 0.15 +1.0 595,944 + BPHYT_RS02640 0.15 +1.8 595,944 + BPHYT_RS02640 0.15 +1.2 595,944 + BPHYT_RS02640 0.15 +1.6 595,945 - BPHYT_RS02640 0.15 +1.0 595,945 - BPHYT_RS02640 0.15 +1.4 596,158 - BPHYT_RS02640 0.28 +1.4 596,158 - BPHYT_RS02640 0.28 +0.7 596,250 + BPHYT_RS02640 0.34 +1.5 596,250 + BPHYT_RS02640 0.34 +1.5 596,250 + BPHYT_RS02640 0.34 +1.1 596,251 - BPHYT_RS02640 0.34 +0.7 596,251 - BPHYT_RS02640 0.34 +1.0 596,251 - BPHYT_RS02640 0.34 +1.0 596,340 + BPHYT_RS02640 0.39 +0.8 596,340 + BPHYT_RS02640 0.39 +0.7 596,340 + BPHYT_RS02640 0.39 +1.0 596,340 + BPHYT_RS02640 0.39 +1.4 596,341 - BPHYT_RS02640 0.39 +1.4 596,488 + BPHYT_RS02640 0.48 +1.1 596,488 + BPHYT_RS02640 0.48 +0.6 596,489 - BPHYT_RS02640 0.48 +0.4 596,489 - BPHYT_RS02640 0.48 +2.0 596,489 - BPHYT_RS02640 0.48 +1.1 596,506 - BPHYT_RS02640 0.49 +0.9 596,572 - BPHYT_RS02640 0.53 -0.4 596,611 - BPHYT_RS02640 0.56 +1.2 596,611 - BPHYT_RS02640 0.56 +0.8 596,799 + BPHYT_RS02640 0.67 +0.8 596,808 - BPHYT_RS02640 0.68 +2.6 597,036 + BPHYT_RS02640 0.82 -0.7 597,036 + BPHYT_RS02640 0.82 -0.2 597,496 + -0.2
Or see this region's nucleotide sequence