Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09905

Experiment: 24hr PHYTO1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09900 and BPHYT_RS09905 are separated by 37 nucleotidesBPHYT_RS09905 and BPHYT_RS09910 are separated by 40 nucleotides BPHYT_RS09900: BPHYT_RS09900 - aldehyde dehydrogenase, at 2,253,435 to 2,254,913 _RS09900 BPHYT_RS09905: BPHYT_RS09905 - hypothetical protein, at 2,254,951 to 2,255,898 _RS09905 BPHYT_RS09910: BPHYT_RS09910 - tyramine oxidase, at 2,255,939 to 2,257,924 _RS09910 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1at 2254.475 kb on - strand, within BPHYT_RS09900at 2254.550 kb on - strand, within BPHYT_RS09900at 2254.550 kb on - strand, within BPHYT_RS09900at 2255.522 kb on - strand, within BPHYT_RS09905at 2255.806 kb on + strandat 2255.807 kb on - strandat 2255.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10
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2,254,475 - BPHYT_RS09900 0.70 -0.0
2,254,550 - BPHYT_RS09900 0.75 -0.3
2,254,550 - BPHYT_RS09900 0.75 -0.5
2,255,522 - BPHYT_RS09905 0.60 -2.3
2,255,806 + -1.0
2,255,807 - +0.8
2,255,807 - +0.4

Or see this region's nucleotide sequence