Experiment: 24hr PHYTO1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03430 and BPHYT_RS03435 are separated by 279 nucleotides BPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotides BPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotides BPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides
BPHYT_RS03430: BPHYT_RS03430 - major facilitator transporter, at 774,064 to 775,341
_RS03430
BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190
_RS03435
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391
_RS03445
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
Position (kb) 776
777 Strain fitness (log2 ratio) -2
-1
0
1
2 at 775.438 kb on + strand at 775.622 kb on + strand at 775.622 kb on + strand at 775.623 kb on - strand at 775.676 kb on + strand at 775.701 kb on - strand, within BPHYT_RS03435 at 775.869 kb on + strand, within BPHYT_RS03435 at 775.881 kb on + strand, within BPHYT_RS03435 at 775.882 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 776.100 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.801 kb on - strand at 776.806 kb on + strand at 776.934 kb on + strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.057 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.241 kb on - strand, within BPHYT_RS03445 at 777.346 kb on + strand at 777.346 kb on + strand at 777.346 kb on + strand at 777.355 kb on - strand at 777.355 kb on - strand at 777.409 kb on + strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.474 kb on + strand at 777.474 kb on + strand at 777.478 kb on - strand at 777.478 kb on - strand at 777.501 kb on + strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.545 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.643 kb on - strand at 777.725 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.739 kb on + strand at 777.753 kb on + strand at 777.754 kb on - strand at 777.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10 remove 775,438 + -0.2 775,622 + +0.2 775,622 + -0.1 775,623 - -0.0 775,676 + -0.6 775,701 - BPHYT_RS03435 0.14 -0.5 775,869 + BPHYT_RS03435 0.44 +0.1 775,881 + BPHYT_RS03435 0.46 -0.7 775,882 - BPHYT_RS03435 0.46 -1.0 775,884 - BPHYT_RS03435 0.46 -0.9 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 -0.2 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 -1.0 775,884 - BPHYT_RS03435 0.46 -0.1 776,100 - BPHYT_RS03435 0.84 -0.7 776,124 - BPHYT_RS03435 0.88 +0.4 776,124 - BPHYT_RS03435 0.88 -0.8 776,124 - BPHYT_RS03435 0.88 -1.1 776,570 - BPHYT_RS03440 0.55 -0.1 776,570 - BPHYT_RS03440 0.55 -0.4 776,591 - BPHYT_RS03440 0.59 -2.3 776,591 - BPHYT_RS03440 0.59 -0.3 776,801 - +0.1 776,806 + -1.8 776,934 + BPHYT_RS03445 0.18 -0.2 777,022 - BPHYT_RS03445 0.34 -1.3 777,022 - BPHYT_RS03445 0.34 +0.1 777,051 + BPHYT_RS03445 0.39 -0.2 777,051 + BPHYT_RS03445 0.39 +0.2 777,057 + BPHYT_RS03445 0.40 -0.6 777,090 + BPHYT_RS03445 0.46 -0.9 777,090 + BPHYT_RS03445 0.46 -1.0 777,241 - BPHYT_RS03445 0.73 -0.1 777,346 + -1.1 777,346 + +0.7 777,346 + -0.2 777,355 - +1.9 777,355 - -0.7 777,409 + +0.3 777,410 - +1.3 777,410 - -0.2 777,474 + +1.0 777,474 + -0.7 777,478 - -1.0 777,478 - -0.6 777,501 + +1.7 777,521 - +0.3 777,521 - +0.2 777,521 - +0.1 777,521 - +1.5 777,545 + -0.1 777,642 + +1.3 777,642 + -0.5 777,642 + -1.1 777,643 - +0.8 777,725 + -0.3 777,728 + +1.4 777,728 + -1.0 777,728 + +0.1 777,728 + -2.1 777,729 - +0.3 777,729 - +0.8 777,729 - -0.2 777,739 + -0.2 777,753 + -0.8 777,754 - -0.0 777,754 - -1.2
Or see this region's nucleotide sequence