Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00860

Experiment: 24hr PHYTO1 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS00855 and BPHYT_RS00860 are separated by 833 nucleotides BPHYT_RS00855: BPHYT_RS00855 - hypothetical protein, at 193,560 to 193,820 _RS00855 BPHYT_RS00860: BPHYT_RS00860 - 3-ketoacyl-ACP reductase, at 194,654 to 195,394 _RS00860 Position (kb) 194 195 196Strain fitness (log2 ratio) -1 0 1 2 3at 193.673 kb on + strand, within BPHYT_RS00855at 194.016 kb on - strandat 194.103 kb on - strandat 194.127 kb on + strandat 194.206 kb on - strandat 194.348 kb on - strandat 194.399 kb on + strandat 194.400 kb on - strandat 194.662 kb on + strandat 194.662 kb on + strandat 194.797 kb on + strand, within BPHYT_RS00860at 194.797 kb on + strand, within BPHYT_RS00860at 194.801 kb on + strand, within BPHYT_RS00860at 194.802 kb on - strand, within BPHYT_RS00860at 194.802 kb on - strand, within BPHYT_RS00860at 194.822 kb on + strand, within BPHYT_RS00860at 194.823 kb on - strand, within BPHYT_RS00860at 194.841 kb on + strand, within BPHYT_RS00860at 194.937 kb on + strand, within BPHYT_RS00860at 195.375 kb on + strandat 195.382 kb on + strandat 195.394 kb on + strandat 195.452 kb on + strandat 195.452 kb on + strandat 195.453 kb on - strandat 195.518 kb on + strandat 195.519 kb on - strandat 195.524 kb on + strandat 196.072 kb on + strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.142 kb on - strandat 196.203 kb on - strandat 196.240 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10
remove
193,673 + BPHYT_RS00855 0.43 -0.8
194,016 - +0.2
194,103 - -0.4
194,127 + +0.7
194,206 - -0.5
194,348 - -0.9
194,399 + +0.3
194,400 - +1.2
194,662 + +0.1
194,662 + -0.9
194,797 + BPHYT_RS00860 0.19 -1.0
194,797 + BPHYT_RS00860 0.19 +3.1
194,801 + BPHYT_RS00860 0.20 +0.5
194,802 - BPHYT_RS00860 0.20 +1.7
194,802 - BPHYT_RS00860 0.20 +0.7
194,822 + BPHYT_RS00860 0.23 +0.2
194,823 - BPHYT_RS00860 0.23 +0.8
194,841 + BPHYT_RS00860 0.25 -0.8
194,937 + BPHYT_RS00860 0.38 -0.3
195,375 + -0.0
195,382 + -0.8
195,394 + +0.0
195,452 + -0.7
195,452 + -0.5
195,453 - +0.3
195,518 + +0.3
195,519 - -0.3
195,524 + +0.3
196,072 + -0.5
196,073 - +0.4
196,073 - -0.1
196,073 - -0.0
196,073 - -1.0
196,142 - +0.3
196,203 - -0.5
196,240 - -0.3

Or see this region's nucleotide sequence