Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00185

Experiment: 24hr PHYTO1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00180 and BPHYT_RS00185 are separated by 739 nucleotidesBPHYT_RS00185 and BPHYT_RS00190 are separated by 89 nucleotides BPHYT_RS00180: BPHYT_RS00180 - ligand-gated channel protein, at 47,404 to 48,183 _RS00180 BPHYT_RS00185: BPHYT_RS00185 - putative transcriptional regulator, at 48,923 to 50,053 _RS00185 BPHYT_RS00190: BPHYT_RS00190 - membrane protein, at 50,143 to 51,210 _RS00190 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.106 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.399 kb on - strandat 48.422 kb on - strandat 48.422 kb on - strandat 48.453 kb on + strandat 48.485 kb on + strandat 48.485 kb on + strandat 48.485 kb on + strandat 48.486 kb on - strandat 48.539 kb on + strandat 48.605 kb on - strandat 48.702 kb on + strandat 48.738 kb on + strandat 48.738 kb on + strandat 48.739 kb on - strandat 48.838 kb on - strandat 48.921 kb on - strandat 49.009 kb on + strandat 49.010 kb on - strandat 49.010 kb on - strandat 49.010 kb on - strandat 49.170 kb on - strand, within BPHYT_RS00185at 49.281 kb on + strand, within BPHYT_RS00185at 49.282 kb on - strand, within BPHYT_RS00185at 49.410 kb on + strand, within BPHYT_RS00185at 49.410 kb on + strand, within BPHYT_RS00185at 49.410 kb on + strand, within BPHYT_RS00185at 49.410 kb on + strand, within BPHYT_RS00185at 49.411 kb on - strand, within BPHYT_RS00185at 49.411 kb on - strand, within BPHYT_RS00185at 49.629 kb on + strand, within BPHYT_RS00185at 49.629 kb on + strand, within BPHYT_RS00185at 49.629 kb on + strand, within BPHYT_RS00185at 49.630 kb on - strand, within BPHYT_RS00185at 49.630 kb on - strand, within BPHYT_RS00185at 49.792 kb on + strand, within BPHYT_RS00185at 49.792 kb on + strand, within BPHYT_RS00185at 49.792 kb on + strand, within BPHYT_RS00185at 49.793 kb on - strand, within BPHYT_RS00185at 49.794 kb on + strand, within BPHYT_RS00185at 49.794 kb on + strand, within BPHYT_RS00185at 49.795 kb on - strand, within BPHYT_RS00185at 49.795 kb on - strand, within BPHYT_RS00185at 49.795 kb on - strand, within BPHYT_RS00185at 49.919 kb on + strand, within BPHYT_RS00185at 50.096 kb on - strandat 50.223 kb on - strandat 50.378 kb on + strand, within BPHYT_RS00190at 50.379 kb on - strand, within BPHYT_RS00190at 50.475 kb on - strand, within BPHYT_RS00190at 50.483 kb on + strand, within BPHYT_RS00190at 50.484 kb on - strand, within BPHYT_RS00190at 50.543 kb on + strand, within BPHYT_RS00190at 50.666 kb on + strand, within BPHYT_RS00190at 50.667 kb on - strand, within BPHYT_RS00190at 50.788 kb on - strand, within BPHYT_RS00190at 50.825 kb on + strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strandat 50.826 kb on - strand, within BPHYT_RS00190at 50.826 kb on - strand, within BPHYT_RS00190at 50.931 kb on - strand, within BPHYT_RS00190at 50.931 kb on - strand, within BPHYT_RS00190at 51.051 kb on - strand, within BPHYT_RS00190

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10
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48,001 + BPHYT_RS00180 0.77 +0.2
48,001 + BPHYT_RS00180 0.77 +0.4
48,001 + BPHYT_RS00180 0.77 -1.6
48,001 + BPHYT_RS00180 0.77 -0.0
48,001 + BPHYT_RS00180 0.77 +0.1
48,001 + BPHYT_RS00180 0.77 +0.0
48,002 - BPHYT_RS00180 0.77 +0.2
48,002 - BPHYT_RS00180 0.77 +0.7
48,002 - BPHYT_RS00180 0.77 -1.2
48,003 + BPHYT_RS00180 0.77 +0.4
48,003 + BPHYT_RS00180 0.77 -0.0
48,003 + BPHYT_RS00180 0.77 +0.1
48,003 + BPHYT_RS00180 0.77 -0.2
48,003 + BPHYT_RS00180 0.77 -1.0
48,003 + BPHYT_RS00180 0.77 -0.6
48,003 + BPHYT_RS00180 0.77 +0.7
48,004 - BPHYT_RS00180 0.77 +0.6
48,004 - BPHYT_RS00180 0.77 -0.3
48,004 - BPHYT_RS00180 0.77 -0.3
48,004 - BPHYT_RS00180 0.77 +0.0
48,004 - BPHYT_RS00180 0.77 -0.0
48,106 + +0.0
48,181 + +0.0
48,181 + +0.1
48,181 + -0.3
48,181 + +0.2
48,399 - -1.4
48,422 - +0.0
48,422 - +0.3
48,453 + +0.9
48,485 + -0.5
48,485 + +1.3
48,485 + +0.5
48,486 - +0.9
48,539 + -1.5
48,605 - +0.3
48,702 + -1.0
48,738 + -0.3
48,738 + -0.6
48,739 - -1.4
48,838 - -0.7
48,921 - -2.9
49,009 + -0.8
49,010 - -0.1
49,010 - +0.8
49,010 - -2.4
49,170 - BPHYT_RS00185 0.22 +0.1
49,281 + BPHYT_RS00185 0.32 +0.8
49,282 - BPHYT_RS00185 0.32 +0.1
49,410 + BPHYT_RS00185 0.43 +1.1
49,410 + BPHYT_RS00185 0.43 -0.7
49,410 + BPHYT_RS00185 0.43 -0.1
49,410 + BPHYT_RS00185 0.43 -0.1
49,411 - BPHYT_RS00185 0.43 +1.3
49,411 - BPHYT_RS00185 0.43 +0.9
49,629 + BPHYT_RS00185 0.62 +0.1
49,629 + BPHYT_RS00185 0.62 -0.5
49,629 + BPHYT_RS00185 0.62 +0.3
49,630 - BPHYT_RS00185 0.63 +0.3
49,630 - BPHYT_RS00185 0.63 -0.0
49,792 + BPHYT_RS00185 0.77 -0.7
49,792 + BPHYT_RS00185 0.77 +0.9
49,792 + BPHYT_RS00185 0.77 -0.1
49,793 - BPHYT_RS00185 0.77 -0.8
49,794 + BPHYT_RS00185 0.77 -0.7
49,794 + BPHYT_RS00185 0.77 -0.7
49,795 - BPHYT_RS00185 0.77 +2.1
49,795 - BPHYT_RS00185 0.77 +1.1
49,795 - BPHYT_RS00185 0.77 +0.6
49,919 + BPHYT_RS00185 0.88 +1.3
50,096 - +0.2
50,223 - +0.9
50,378 + BPHYT_RS00190 0.22 -0.3
50,379 - BPHYT_RS00190 0.22 -0.7
50,475 - BPHYT_RS00190 0.31 +1.3
50,483 + BPHYT_RS00190 0.32 -0.4
50,484 - BPHYT_RS00190 0.32 +0.5
50,543 + BPHYT_RS00190 0.37 -0.9
50,666 + BPHYT_RS00190 0.49 -0.6
50,667 - BPHYT_RS00190 0.49 +0.8
50,788 - BPHYT_RS00190 0.60 -0.2
50,825 + BPHYT_RS00190 0.64 -0.7
50,826 - BPHYT_RS00190 0.64 -0.1
50,826 - BPHYT_RS00190 0.64 +0.6
50,826 - -0.8
50,826 - BPHYT_RS00190 0.64 +0.2
50,826 - BPHYT_RS00190 0.64 +0.1
50,931 - BPHYT_RS00190 0.74 -0.7
50,931 - BPHYT_RS00190 0.74 -1.7
51,051 - BPHYT_RS00190 0.85 -0.6

Or see this region's nucleotide sequence