Experiment: 24hr PHYTO1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26220 and BPHYT_RS26225 overlap by 10 nucleotides BPHYT_RS26225 and BPHYT_RS26230 are separated by 77 nucleotides BPHYT_RS26230 and BPHYT_RS26235 are separated by 172 nucleotides BPHYT_RS26235 and BPHYT_RS26240 are separated by 145 nucleotides
BPHYT_RS26220: BPHYT_RS26220 - 6-phosphogluconate dehydrogenase, at 1,454,569 to 1,455,606
_RS26220
BPHYT_RS26225: BPHYT_RS26225 - hypothetical protein, at 1,455,597 to 1,455,917
_RS26225
BPHYT_RS26230: BPHYT_RS26230 - MFS transporter, at 1,455,995 to 1,457,329
_RS26230
BPHYT_RS26235: BPHYT_RS26235 - hypothetical protein, at 1,457,502 to 1,458,038
_RS26235
BPHYT_RS26240: BPHYT_RS26240 - hypothetical protein, at 1,458,184 to 1,458,480
_RS26240
Position (kb) 1455
1456
1457
1458 Strain fitness (log2 ratio) -1
0
1
2 at 1455.002 kb on + strand, within BPHYT_RS26220 at 1455.003 kb on - strand, within BPHYT_RS26220 at 1455.219 kb on - strand, within BPHYT_RS26220 at 1455.266 kb on + strand, within BPHYT_RS26220 at 1455.267 kb on - strand, within BPHYT_RS26220 at 1455.267 kb on - strand, within BPHYT_RS26220 at 1455.320 kb on + strand, within BPHYT_RS26220 at 1455.528 kb on + strand at 1455.668 kb on + strand, within BPHYT_RS26225 at 1455.945 kb on + strand at 1456.276 kb on - strand, within BPHYT_RS26230 at 1456.276 kb on - strand, within BPHYT_RS26230 at 1456.276 kb on - strand, within BPHYT_RS26230 at 1456.534 kb on + strand, within BPHYT_RS26230 at 1457.546 kb on - strand at 1457.546 kb on - strand at 1457.552 kb on - strand at 1457.552 kb on - strand at 1457.560 kb on + strand, within BPHYT_RS26235 at 1458.151 kb on + strand at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10 remove 1,455,002 + BPHYT_RS26220 0.42 -0.3 1,455,003 - BPHYT_RS26220 0.42 -1.2 1,455,219 - BPHYT_RS26220 0.63 +0.1 1,455,266 + BPHYT_RS26220 0.67 -0.5 1,455,267 - BPHYT_RS26220 0.67 +0.7 1,455,267 - BPHYT_RS26220 0.67 -1.0 1,455,320 + BPHYT_RS26220 0.72 -0.1 1,455,528 + +0.1 1,455,668 + BPHYT_RS26225 0.22 -1.0 1,455,945 + +0.8 1,456,276 - BPHYT_RS26230 0.21 -0.1 1,456,276 - BPHYT_RS26230 0.21 -0.6 1,456,276 - BPHYT_RS26230 0.21 -0.5 1,456,534 + BPHYT_RS26230 0.40 -0.2 1,457,546 - +1.8 1,457,546 - -0.1 1,457,552 - +0.2 1,457,552 - -0.9 1,457,560 + BPHYT_RS26235 0.11 +1.4 1,458,151 + -1.2 1,458,240 - BPHYT_RS26240 0.19 -0.1 1,458,240 - BPHYT_RS26240 0.19 -0.3 1,458,240 - BPHYT_RS26240 0.19 -0.9 1,458,240 - BPHYT_RS26240 0.19 +0.9
Or see this region's nucleotide sequence