Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11915

Experiment: 24hr PHYTO1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11910 and BPHYT_RS11915 are separated by 491 nucleotidesBPHYT_RS11915 and BPHYT_RS11920 are separated by 788 nucleotides BPHYT_RS11910: BPHYT_RS11910 - chemotaxis protein CheY, at 2,709,052 to 2,709,714 _RS11910 BPHYT_RS11915: BPHYT_RS11915 - hypothetical protein, at 2,710,206 to 2,710,628 _RS11915 BPHYT_RS11920: BPHYT_RS11920 - membrane protein, at 2,711,417 to 2,712,418 _RS11920 Position (kb) 2710 2711Strain fitness (log2 ratio) -1 0 1at 2710.411 kb on - strand, within BPHYT_RS11915at 2710.559 kb on - strand, within BPHYT_RS11915at 2711.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 10
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2,710,411 - BPHYT_RS11915 0.48 -0.1
2,710,559 - BPHYT_RS11915 0.83 +0.7
2,711,237 + +0.6

Or see this region's nucleotide sequence