Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33800 and BPHYT_RS33805 are separated by 181 nucleotides BPHYT_RS33805 and BPHYT_RS33810 overlap by 19 nucleotides BPHYT_RS33810 and BPHYT_RS33815 are separated by 59 nucleotides
BPHYT_RS33800: BPHYT_RS33800 - glycosyl hydrolase, at 3,174,620 to 3,177,475
_RS33800
BPHYT_RS33805: BPHYT_RS33805 - hypothetical protein, at 3,177,657 to 3,177,866
_RS33805
BPHYT_RS33810: BPHYT_RS33810 - membrane protein, at 3,177,848 to 3,178,570
_RS33810
BPHYT_RS33815: BPHYT_RS33815 - hypothetical protein, at 3,178,630 to 3,179,973
_RS33815
Position (kb) 3177
3178 Strain fitness (log2 ratio) -1
0
1 at 3177.153 kb on - strand, within BPHYT_RS33800 at 3177.407 kb on + strand at 3177.510 kb on + strand at 3177.788 kb on - strand, within BPHYT_RS33805 at 3178.114 kb on - strand, within BPHYT_RS33810 at 3178.114 kb on - strand, within BPHYT_RS33810 at 3178.356 kb on + strand, within BPHYT_RS33810 at 3178.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,177,153 - BPHYT_RS33800 0.89 +0.3 3,177,407 + +0.1 3,177,510 + +1.1 3,177,788 - BPHYT_RS33805 0.62 -1.1 3,178,114 - BPHYT_RS33810 0.37 -0.5 3,178,114 - BPHYT_RS33810 0.37 -0.4 3,178,356 + BPHYT_RS33810 0.70 +0.2 3,178,599 - -0.6
Or see this region's nucleotide sequence