Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27465 and BPHYT_RS27470 are separated by 64 nucleotides BPHYT_RS27470 and BPHYT_RS27475 are separated by 170 nucleotides BPHYT_RS27475 and BPHYT_RS27480 are separated by 86 nucleotides
BPHYT_RS27465: BPHYT_RS27465 - DSBA oxidoreductase, at 1,737,680 to 1,739,257
_RS27465
BPHYT_RS27470: BPHYT_RS27470 - AraC family transcriptional regulator, at 1,739,322 to 1,740,071
_RS27470
BPHYT_RS27475: BPHYT_RS27475 - glutaminase, at 1,740,242 to 1,741,156
_RS27475
BPHYT_RS27480: BPHYT_RS27480 - NADPH:quinone reductase, at 1,741,243 to 1,742,253
_RS27480
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -1
0
1 at 1739.568 kb on + strand, within BPHYT_RS27470 at 1740.117 kb on + strand at 1740.248 kb on + strand at 1740.249 kb on - strand at 1740.803 kb on + strand, within BPHYT_RS27475 at 1741.081 kb on + strand at 1741.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,739,568 + BPHYT_RS27470 0.33 -0.9 1,740,117 + +1.1 1,740,248 + -0.0 1,740,249 - -0.0 1,740,803 + BPHYT_RS27475 0.61 -1.0 1,741,081 + -0.9 1,741,133 + -0.1
Or see this region's nucleotide sequence