Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20460 and BPHYT_RS20465 are separated by 116 nucleotides BPHYT_RS20465 and BPHYT_RS20470 are separated by 55 nucleotides BPHYT_RS20470 and BPHYT_RS20475 are separated by 32 nucleotides
BPHYT_RS20460: BPHYT_RS20460 - NmrA family transcriptional regulator, at 152,561 to 153,442
_RS20460
BPHYT_RS20465: BPHYT_RS20465 - LysR family transcriptional regulator, at 153,559 to 154,443
_RS20465
BPHYT_RS20470: BPHYT_RS20470 - hypothetical protein, at 154,499 to 155,131
_RS20470
BPHYT_RS20475: BPHYT_RS20475 - hypothetical protein, at 155,164 to 156,384
_RS20475
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.860 kb on - strand, within BPHYT_RS20460 at 152.975 kb on - strand, within BPHYT_RS20460 at 152.980 kb on - strand, within BPHYT_RS20460 at 153.033 kb on + strand, within BPHYT_RS20460 at 153.034 kb on - strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.418 kb on + strand at 153.428 kb on + strand at 153.482 kb on + strand at 153.970 kb on + strand, within BPHYT_RS20465 at 154.073 kb on + strand, within BPHYT_RS20465 at 154.361 kb on - strand at 154.551 kb on + strand at 154.552 kb on - strand at 154.552 kb on - strand at 154.907 kb on - strand, within BPHYT_RS20470 at 155.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 152,757 - BPHYT_RS20460 0.22 +1.2 152,757 - BPHYT_RS20460 0.22 -0.6 152,859 + BPHYT_RS20460 0.34 -0.3 152,859 + BPHYT_RS20460 0.34 +0.5 152,859 + BPHYT_RS20460 0.34 +0.3 152,860 - BPHYT_RS20460 0.34 -0.0 152,975 - BPHYT_RS20460 0.47 -0.5 152,980 - BPHYT_RS20460 0.48 +0.4 153,033 + BPHYT_RS20460 0.54 +1.7 153,034 - BPHYT_RS20460 0.54 +0.3 153,150 + BPHYT_RS20460 0.67 -0.2 153,150 + BPHYT_RS20460 0.67 +0.3 153,418 + +1.5 153,428 + +0.2 153,482 + -0.1 153,970 + BPHYT_RS20465 0.46 +0.1 154,073 + BPHYT_RS20465 0.58 -0.2 154,361 - +0.6 154,551 + +0.3 154,552 - -0.2 154,552 - +0.4 154,907 - BPHYT_RS20470 0.64 +0.5 155,192 - -0.8
Or see this region's nucleotide sequence