Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17880 and BPHYT_RS17885 are separated by 71 nucleotides BPHYT_RS17885 and BPHYT_RS17890 overlap by 1 nucleotides BPHYT_RS17890 and BPHYT_RS17895 are separated by 195 nucleotides
BPHYT_RS17880: BPHYT_RS17880 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,037,298 to 4,038,503
_RS17880
BPHYT_RS17885: BPHYT_RS17885 - 3-dehydroquinate synthase, at 4,038,575 to 4,039,660
_RS17885
BPHYT_RS17890: BPHYT_RS17890 - shikimate kinase, at 4,039,660 to 4,040,211
_RS17890
BPHYT_RS17895: BPHYT_RS17895 - secretin, at 4,040,407 to 4,042,185
_RS17895
Position (kb) 4038
4039
4040 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.676 kb on - strand, within BPHYT_RS17880 at 4037.753 kb on - strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4038.007 kb on + strand, within BPHYT_RS17880 at 4038.007 kb on + strand, within BPHYT_RS17880 at 4038.119 kb on + strand, within BPHYT_RS17880 at 4038.119 kb on + strand, within BPHYT_RS17880 at 4038.120 kb on - strand, within BPHYT_RS17880 at 4038.120 kb on - strand, within BPHYT_RS17880 at 4038.477 kb on + strand at 4038.478 kb on - strand at 4038.711 kb on + strand, within BPHYT_RS17885 at 4038.712 kb on - strand, within BPHYT_RS17885 at 4038.813 kb on - strand, within BPHYT_RS17885 at 4039.179 kb on + strand, within BPHYT_RS17885 at 4039.299 kb on + strand, within BPHYT_RS17885 at 4039.300 kb on - strand, within BPHYT_RS17885 at 4039.428 kb on + strand, within BPHYT_RS17885 at 4039.429 kb on - strand, within BPHYT_RS17885 at 4039.429 kb on - strand, within BPHYT_RS17885 at 4039.645 kb on + strand at 4039.645 kb on + strand at 4039.651 kb on + strand at 4039.652 kb on - strand at 4039.652 kb on - strand at 4039.652 kb on - strand at 4039.662 kb on - strand at 4039.778 kb on - strand, within BPHYT_RS17890 at 4039.797 kb on - strand, within BPHYT_RS17890 at 4039.899 kb on - strand, within BPHYT_RS17890 at 4040.173 kb on + strand at 4040.183 kb on - strand at 4040.253 kb on + strand at 4040.337 kb on - strand at 4040.383 kb on + strand at 4040.503 kb on + strand at 4040.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,037,675 + BPHYT_RS17880 0.31 +0.3 4,037,675 + BPHYT_RS17880 0.31 -2.0 4,037,675 + BPHYT_RS17880 0.31 +0.2 4,037,676 - BPHYT_RS17880 0.31 -0.3 4,037,753 - BPHYT_RS17880 0.38 -0.7 4,037,839 + BPHYT_RS17880 0.45 -0.2 4,037,839 + BPHYT_RS17880 0.45 -0.5 4,037,839 + BPHYT_RS17880 0.45 -0.5 4,037,840 - BPHYT_RS17880 0.45 -0.8 4,037,840 - BPHYT_RS17880 0.45 -0.7 4,037,840 - BPHYT_RS17880 0.45 -0.1 4,038,007 + BPHYT_RS17880 0.59 -0.5 4,038,007 + BPHYT_RS17880 0.59 +0.7 4,038,119 + BPHYT_RS17880 0.68 -1.0 4,038,119 + BPHYT_RS17880 0.68 +0.3 4,038,120 - BPHYT_RS17880 0.68 -2.2 4,038,120 - BPHYT_RS17880 0.68 +0.0 4,038,477 + +0.2 4,038,478 - -0.1 4,038,711 + BPHYT_RS17885 0.13 -1.7 4,038,712 - BPHYT_RS17885 0.13 -0.4 4,038,813 - BPHYT_RS17885 0.22 +1.1 4,039,179 + BPHYT_RS17885 0.56 -2.6 4,039,299 + BPHYT_RS17885 0.67 -3.3 4,039,300 - BPHYT_RS17885 0.67 -1.7 4,039,428 + BPHYT_RS17885 0.79 -2.7 4,039,429 - BPHYT_RS17885 0.79 +1.1 4,039,429 - BPHYT_RS17885 0.79 -2.2 4,039,645 + -0.4 4,039,645 + -2.0 4,039,651 + -1.7 4,039,652 - +0.3 4,039,652 - +0.1 4,039,652 - -0.1 4,039,662 - -0.4 4,039,778 - BPHYT_RS17890 0.21 +0.1 4,039,797 - BPHYT_RS17890 0.25 +0.1 4,039,899 - BPHYT_RS17890 0.43 -2.2 4,040,173 + +1.1 4,040,183 - -0.9 4,040,253 + -0.4 4,040,337 - -0.1 4,040,383 + -0.2 4,040,503 + +0.6 4,040,578 - -0.5
Or see this region's nucleotide sequence