Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03870 and BPHYT_RS03875 are separated by 69 nucleotides BPHYT_RS03875 and BPHYT_RS03880 are separated by 70 nucleotides BPHYT_RS03880 and BPHYT_RS03885 are separated by 243 nucleotides BPHYT_RS03885 and BPHYT_RS03890 are separated by 93 nucleotides
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
BPHYT_RS03875: BPHYT_RS03875 - dehydrogenase, at 879,693 to 880,259
_RS03875
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
BPHYT_RS03885: BPHYT_RS03885 - 2-hydroxychromene-2-carboxylate isomerase, at 881,554 to 882,204
_RS03885
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
Position (kb) 880
881
882 Strain fitness (log2 ratio) -1
0
1 at 879.354 kb on + strand, within BPHYT_RS03870 at 879.355 kb on - strand, within BPHYT_RS03870 at 879.631 kb on + strand at 879.764 kb on + strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 880.402 kb on - strand at 880.479 kb on - strand, within BPHYT_RS03880 at 880.542 kb on - strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.889 kb on + strand, within BPHYT_RS03880 at 880.989 kb on - strand, within BPHYT_RS03880 at 881.112 kb on - strand, within BPHYT_RS03880 at 881.283 kb on + strand at 881.419 kb on + strand at 881.506 kb on + strand at 881.507 kb on - strand at 881.530 kb on - strand at 881.549 kb on - strand at 881.555 kb on + strand at 881.642 kb on + strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.739 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 882.066 kb on - strand, within BPHYT_RS03885 at 882.145 kb on - strand at 882.204 kb on + strand at 882.204 kb on + strand at 882.205 kb on - strand at 882.248 kb on - strand at 882.261 kb on + strand at 882.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 879,354 + BPHYT_RS03870 0.89 +0.1 879,355 - BPHYT_RS03870 0.89 -0.1 879,631 + -0.3 879,764 + BPHYT_RS03875 0.13 -1.0 879,765 - BPHYT_RS03875 0.13 +0.3 879,765 - BPHYT_RS03875 0.13 -0.9 879,765 - BPHYT_RS03875 0.13 -0.4 880,402 - +0.7 880,479 - BPHYT_RS03880 0.15 -0.1 880,542 - BPHYT_RS03880 0.22 -0.6 880,730 + BPHYT_RS03880 0.41 -0.4 880,730 + BPHYT_RS03880 0.41 +0.4 880,730 + BPHYT_RS03880 0.41 -0.9 880,730 + BPHYT_RS03880 0.41 -0.6 880,889 + BPHYT_RS03880 0.57 -0.9 880,989 - BPHYT_RS03880 0.67 -0.4 881,112 - BPHYT_RS03880 0.80 -0.7 881,283 + +0.0 881,419 + +1.1 881,506 + +0.6 881,507 - -0.6 881,530 - -0.8 881,549 - +0.2 881,555 + +0.7 881,642 + BPHYT_RS03885 0.14 +1.0 881,643 - BPHYT_RS03885 0.14 -0.4 881,643 - BPHYT_RS03885 0.14 -0.2 881,739 + BPHYT_RS03885 0.28 -0.9 881,875 + BPHYT_RS03885 0.49 -0.0 881,875 + BPHYT_RS03885 0.49 +0.6 881,967 - BPHYT_RS03885 0.63 -0.6 881,967 - BPHYT_RS03885 0.63 -0.9 881,967 - BPHYT_RS03885 0.63 +0.1 881,967 - BPHYT_RS03885 0.63 +0.2 882,066 - BPHYT_RS03885 0.79 -0.2 882,145 - -0.1 882,204 + -0.9 882,204 + -1.4 882,205 - +0.2 882,248 - -0.3 882,261 + +0.9 882,303 - -0.1
Or see this region's nucleotide sequence