Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03595 and BPHYT_RS03600 are separated by 25 nucleotides BPHYT_RS03600 and BPHYT_RS03605 are separated by 351 nucleotides
BPHYT_RS03595: BPHYT_RS03595 - chaperone protein DnaJ, at 817,072 to 818,211
_RS03595
BPHYT_RS03600: BPHYT_RS03600 - anthranilate synthase, at 818,237 to 820,153
_RS03600
BPHYT_RS03605: BPHYT_RS03605 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 820,505 to 821,320
_RS03605
Position (kb) 818
819
820
821 Strain fitness (log2 ratio) -1
0
1
2
3 at 818.236 kb on + strand at 818.236 kb on + strand at 818.237 kb on - strand at 818.237 kb on - strand at 818.696 kb on + strand, within BPHYT_RS03600 at 818.708 kb on + strand, within BPHYT_RS03600 at 818.708 kb on + strand, within BPHYT_RS03600 at 818.709 kb on - strand, within BPHYT_RS03600 at 818.733 kb on + strand, within BPHYT_RS03600 at 818.733 kb on + strand, within BPHYT_RS03600 at 819.239 kb on + strand, within BPHYT_RS03600 at 819.240 kb on - strand, within BPHYT_RS03600 at 819.240 kb on - strand, within BPHYT_RS03600 at 819.240 kb on - strand, within BPHYT_RS03600 at 819.527 kb on + strand, within BPHYT_RS03600 at 819.527 kb on + strand, within BPHYT_RS03600 at 819.527 kb on + strand, within BPHYT_RS03600 at 819.527 kb on + strand, within BPHYT_RS03600 at 819.527 kb on + strand, within BPHYT_RS03600 at 819.528 kb on - strand, within BPHYT_RS03600 at 819.528 kb on - strand, within BPHYT_RS03600 at 819.550 kb on - strand, within BPHYT_RS03600 at 819.851 kb on + strand, within BPHYT_RS03600 at 820.155 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 818,236 + +0.2 818,236 + -0.6 818,237 - -0.4 818,237 - -0.6 818,696 + BPHYT_RS03600 0.24 +0.3 818,708 + BPHYT_RS03600 0.25 -0.8 818,708 + BPHYT_RS03600 0.25 -1.0 818,709 - BPHYT_RS03600 0.25 -0.4 818,733 + BPHYT_RS03600 0.26 +0.3 818,733 + BPHYT_RS03600 0.26 +0.2 819,239 + BPHYT_RS03600 0.52 +0.5 819,240 - BPHYT_RS03600 0.52 +0.3 819,240 - BPHYT_RS03600 0.52 -0.5 819,240 - BPHYT_RS03600 0.52 -1.3 819,527 + BPHYT_RS03600 0.67 -0.0 819,527 + BPHYT_RS03600 0.67 -0.1 819,527 + BPHYT_RS03600 0.67 -0.4 819,527 + BPHYT_RS03600 0.67 +3.0 819,527 + BPHYT_RS03600 0.67 +0.6 819,528 - BPHYT_RS03600 0.67 -0.2 819,528 - BPHYT_RS03600 0.67 -0.4 819,550 - BPHYT_RS03600 0.68 +0.3 819,851 + BPHYT_RS03600 0.84 +0.5 820,155 - -0.2 820,417 - -0.6 820,417 - +0.5 820,417 - +0.3 820,514 - +0.7
Or see this region's nucleotide sequence