Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02335 and BPHYT_RS02340 are separated by 253 nucleotides BPHYT_RS02340 and BPHYT_RS02345 are separated by 49 nucleotides
BPHYT_RS02335: BPHYT_RS02335 - fumarylacetoacetate hydrolase, at 535,271 to 536,254
_RS02335
BPHYT_RS02340: BPHYT_RS02340 - branched-chain amino acid ABC transporter substrate-binding protein, at 536,508 to 537,743
_RS02340
BPHYT_RS02345: BPHYT_RS02345 - enoyl-CoA hydratase, at 537,793 to 538,680
_RS02345
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.554 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 536.094 kb on - strand, within BPHYT_RS02335 at 536.173 kb on + strand at 536.174 kb on - strand at 536.297 kb on + strand at 536.361 kb on - strand at 536.475 kb on - strand at 536.635 kb on + strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.677 kb on + strand, within BPHYT_RS02340 at 536.678 kb on - strand, within BPHYT_RS02340 at 536.773 kb on - strand, within BPHYT_RS02340 at 536.801 kb on + strand, within BPHYT_RS02340 at 536.802 kb on - strand, within BPHYT_RS02340 at 536.903 kb on - strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.294 kb on + strand, within BPHYT_RS02340 at 537.295 kb on - strand, within BPHYT_RS02340 at 537.309 kb on + strand, within BPHYT_RS02340 at 537.310 kb on - strand, within BPHYT_RS02340 at 537.450 kb on + strand, within BPHYT_RS02340 at 537.507 kb on + strand, within BPHYT_RS02340 at 537.508 kb on - strand, within BPHYT_RS02340 at 537.730 kb on - strand at 537.776 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.827 kb on - strand at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.327 kb on + strand, within BPHYT_RS02345 at 538.327 kb on + strand at 538.328 kb on - strand, within BPHYT_RS02345 at 538.698 kb on + strand at 538.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 535,532 + BPHYT_RS02335 0.27 +0.4 535,532 + BPHYT_RS02335 0.27 -0.6 535,532 + BPHYT_RS02335 0.27 +2.1 535,554 + BPHYT_RS02335 0.29 -0.1 535,653 + BPHYT_RS02335 0.39 -1.2 535,653 + BPHYT_RS02335 0.39 +0.6 535,653 + BPHYT_RS02335 0.39 -0.2 535,653 + BPHYT_RS02335 0.39 +0.4 535,654 - BPHYT_RS02335 0.39 +0.4 535,654 - BPHYT_RS02335 0.39 -0.4 535,654 - BPHYT_RS02335 0.39 +0.5 536,094 - BPHYT_RS02335 0.84 -0.1 536,173 + -0.7 536,174 - -1.0 536,297 + -0.2 536,361 - -0.7 536,475 - -0.3 536,635 + BPHYT_RS02340 0.10 +1.1 536,636 - BPHYT_RS02340 0.10 +0.5 536,636 - BPHYT_RS02340 0.10 +0.0 536,677 + BPHYT_RS02340 0.14 -1.4 536,678 - BPHYT_RS02340 0.14 +0.2 536,773 - BPHYT_RS02340 0.21 +0.4 536,801 + BPHYT_RS02340 0.24 -0.3 536,802 - BPHYT_RS02340 0.24 -1.2 536,903 - BPHYT_RS02340 0.32 -0.8 537,105 + BPHYT_RS02340 0.48 -0.5 537,105 + BPHYT_RS02340 0.48 +0.8 537,203 + BPHYT_RS02340 0.56 -0.2 537,203 + BPHYT_RS02340 0.56 +0.0 537,294 + BPHYT_RS02340 0.64 +1.6 537,295 - BPHYT_RS02340 0.64 +0.5 537,309 + BPHYT_RS02340 0.65 +0.5 537,310 - BPHYT_RS02340 0.65 -0.5 537,450 + BPHYT_RS02340 0.76 +1.4 537,507 + BPHYT_RS02340 0.81 +0.1 537,508 - BPHYT_RS02340 0.81 +0.3 537,730 - +0.5 537,776 + +1.5 537,778 + -2.1 537,778 + -0.2 537,778 + +0.3 537,778 + +0.2 537,778 + -0.4 537,779 - -0.9 537,779 - -0.0 537,779 - +0.1 537,779 - -0.6 537,827 - -0.4 538,324 + BPHYT_RS02345 0.60 +0.6 538,324 + BPHYT_RS02345 0.60 +1.1 538,324 + BPHYT_RS02345 0.60 +2.1 538,324 + BPHYT_RS02345 0.60 +0.1 538,325 - BPHYT_RS02345 0.60 +0.8 538,325 - BPHYT_RS02345 0.60 -0.2 538,325 - BPHYT_RS02345 0.60 -0.3 538,327 + BPHYT_RS02345 0.60 +0.6 538,327 + +1.1 538,328 - BPHYT_RS02345 0.60 +4.7 538,698 + -0.8 538,699 - +0.6
Or see this region's nucleotide sequence