Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25520 and BPHYT_RS25525 are separated by 626 nucleotides BPHYT_RS25525 and BPHYT_RS25530 are separated by 301 nucleotides BPHYT_RS25530 and BPHYT_RS25535 overlap by 1 nucleotides
BPHYT_RS25520: BPHYT_RS25520 - TetR family transcriptional regulator, at 1,299,644 to 1,300,237
_RS25520
BPHYT_RS25525: BPHYT_RS25525 - hypothetical protein, at 1,300,864 to 1,301,130
_RS25525
BPHYT_RS25530: BPHYT_RS25530 - thioredoxin, at 1,301,432 to 1,301,821
_RS25530
BPHYT_RS25535: BPHYT_RS25535 - cytochrome C biogenesis protein, at 1,301,821 to 1,302,549
_RS25535
Position (kb)
1300
1301
1302 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1300.370 kb on + strand at 1300.371 kb on - strand at 1300.460 kb on - strand at 1300.555 kb on - strand at 1300.565 kb on - strand at 1300.572 kb on - strand at 1301.057 kb on - strand, within BPHYT_RS25525 at 1301.176 kb on + strand at 1301.205 kb on - strand at 1301.257 kb on + strand at 1301.375 kb on + strand at 1301.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,300,370 + +0.1 1,300,371 - -1.2 1,300,460 - +3.2 1,300,555 - +1.2 1,300,565 - +0.4 1,300,572 - -3.0 1,301,057 - BPHYT_RS25525 0.72 +0.7 1,301,176 + +1.0 1,301,205 - -0.2 1,301,257 + +0.5 1,301,375 + +1.7 1,301,849 + -1.0
Or see this region's nucleotide sequence