Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25030

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25025 and BPHYT_RS25030 are separated by 269 nucleotidesBPHYT_RS25030 and BPHYT_RS25035 are separated by 86 nucleotides BPHYT_RS25025: BPHYT_RS25025 - acyl-CoA dehydrogenase, at 1,183,621 to 1,185,426 _RS25025 BPHYT_RS25030: BPHYT_RS25030 - gluconate 2-dehydrogenase, at 1,185,696 to 1,186,469 _RS25030 BPHYT_RS25035: BPHYT_RS25035 - long-chain fatty acid--CoA ligase, at 1,186,556 to 1,188,253 _RS25035 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -1 0 1 2at 1185.047 kb on + strand, within BPHYT_RS25025at 1185.134 kb on + strand, within BPHYT_RS25025at 1185.564 kb on - strandat 1185.633 kb on - strandat 1185.633 kb on - strandat 1185.965 kb on + strand, within BPHYT_RS25030at 1186.186 kb on - strand, within BPHYT_RS25030at 1186.344 kb on - strand, within BPHYT_RS25030at 1186.486 kb on - strandat 1186.631 kb on + strandat 1186.792 kb on + strand, within BPHYT_RS25035at 1186.823 kb on + strand, within BPHYT_RS25035at 1187.015 kb on + strand, within BPHYT_RS25035at 1187.015 kb on + strand, within BPHYT_RS25035at 1187.413 kb on - strand, within BPHYT_RS25035

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,185,047 + BPHYT_RS25025 0.79 -0.3
1,185,134 + BPHYT_RS25025 0.84 +0.2
1,185,564 - -0.1
1,185,633 - -0.1
1,185,633 - -0.8
1,185,965 + BPHYT_RS25030 0.35 +1.0
1,186,186 - BPHYT_RS25030 0.63 -0.4
1,186,344 - BPHYT_RS25030 0.84 +1.3
1,186,486 - +0.0
1,186,631 + +2.2
1,186,792 + BPHYT_RS25035 0.14 -0.1
1,186,823 + BPHYT_RS25035 0.16 -1.1
1,187,015 + BPHYT_RS25035 0.27 +0.3
1,187,015 + BPHYT_RS25035 0.27 -0.6
1,187,413 - BPHYT_RS25035 0.50 -1.2

Or see this region's nucleotide sequence