Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23830 and BPHYT_RS23835 are separated by 73 nucleotides BPHYT_RS23835 and BPHYT_RS23840 are separated by 161 nucleotides BPHYT_RS23840 and BPHYT_RS23845 are separated by 672 nucleotides
BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423
_RS23830
BPHYT_RS23835: BPHYT_RS23835 - membrane protein, at 915,497 to 915,751
_RS23835
BPHYT_RS23840: BPHYT_RS23840 - methyltransferase, at 915,913 to 916,620
_RS23840
BPHYT_RS23845: BPHYT_RS23845 - hypothetical protein, at 917,293 to 917,817
_RS23845
Position (kb) 915
916
917 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 915.001 kb on + strand, within BPHYT_RS23830 at 915.369 kb on + strand at 915.477 kb on + strand at 915.799 kb on + strand at 915.851 kb on + strand at 915.852 kb on - strand at 916.042 kb on - strand at 916.081 kb on - strand, within BPHYT_RS23840 at 916.081 kb on - strand at 916.112 kb on + strand, within BPHYT_RS23840 at 916.112 kb on + strand, within BPHYT_RS23840 at 916.113 kb on - strand, within BPHYT_RS23840 at 916.181 kb on + strand, within BPHYT_RS23840 at 916.427 kb on + strand, within BPHYT_RS23840 at 916.663 kb on + strand at 916.664 kb on - strand at 916.945 kb on - strand at 916.945 kb on - strand at 916.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 915,001 + BPHYT_RS23830 0.72 -0.6 915,369 + +0.8 915,477 + -1.8 915,799 + +1.8 915,851 + -1.2 915,852 - +0.5 916,042 - +0.1 916,081 - BPHYT_RS23840 0.24 -4.5 916,081 - -1.7 916,112 + BPHYT_RS23840 0.28 +0.7 916,112 + BPHYT_RS23840 0.28 -3.3 916,113 - BPHYT_RS23840 0.28 -2.0 916,181 + BPHYT_RS23840 0.38 -3.6 916,427 + BPHYT_RS23840 0.73 -5.1 916,663 + +1.5 916,664 - -0.2 916,945 - -1.4 916,945 - -0.2 916,945 - +0.5
Or see this region's nucleotide sequence