Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23020 and BPHYT_RS23025 overlap by 4 nucleotides BPHYT_RS23025 and BPHYT_RS23030 overlap by 1 nucleotides
BPHYT_RS23020: BPHYT_RS23020 - alcohol dehydrogenase, at 724,604 to 725,959
_RS23020
BPHYT_RS23025: BPHYT_RS23025 - GMC family oxidoreductase, at 725,956 to 727,734
_RS23025
BPHYT_RS23030: BPHYT_RS23030 - gluconate 2-dehydrogenase, at 727,734 to 728,474
_RS23030
Position (kb) 725
726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 725.547 kb on + strand, within BPHYT_RS23020 at 725.583 kb on + strand, within BPHYT_RS23020 at 725.584 kb on - strand, within BPHYT_RS23020 at 725.959 kb on + strand at 726.053 kb on + strand at 726.095 kb on - strand at 726.228 kb on + strand, within BPHYT_RS23025 at 726.229 kb on - strand, within BPHYT_RS23025 at 726.230 kb on + strand, within BPHYT_RS23025 at 726.291 kb on - strand, within BPHYT_RS23025 at 726.990 kb on - strand, within BPHYT_RS23025 at 726.990 kb on - strand, within BPHYT_RS23025 at 727.072 kb on - strand, within BPHYT_RS23025 at 727.143 kb on - strand, within BPHYT_RS23025 at 727.214 kb on - strand, within BPHYT_RS23025 at 727.556 kb on + strand, within BPHYT_RS23025 at 727.556 kb on + strand, within BPHYT_RS23025 at 727.557 kb on - strand at 727.557 kb on - strand at 727.557 kb on - strand at 727.557 kb on - strand at 728.143 kb on + strand, within BPHYT_RS23030 at 728.436 kb on + strand at 728.456 kb on + strand at 728.457 kb on - strand at 728.482 kb on + strand at 728.483 kb on - strand at 728.483 kb on - strand at 728.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 725,547 + BPHYT_RS23020 0.70 +0.4 725,583 + BPHYT_RS23020 0.72 +0.2 725,584 - BPHYT_RS23020 0.72 -0.1 725,959 + +0.0 726,053 + -0.3 726,095 - -0.3 726,228 + BPHYT_RS23025 0.15 -0.4 726,229 - BPHYT_RS23025 0.15 -1.2 726,230 + BPHYT_RS23025 0.15 +0.0 726,291 - BPHYT_RS23025 0.19 -1.8 726,990 - BPHYT_RS23025 0.58 -0.9 726,990 - BPHYT_RS23025 0.58 -0.5 727,072 - BPHYT_RS23025 0.63 +0.5 727,143 - BPHYT_RS23025 0.67 -0.7 727,214 - BPHYT_RS23025 0.71 -1.0 727,556 + BPHYT_RS23025 0.90 +0.1 727,556 + BPHYT_RS23025 0.90 +0.4 727,557 - -1.8 727,557 - -0.8 727,557 - -0.5 727,557 - +0.7 728,143 + BPHYT_RS23030 0.55 +0.3 728,436 + +0.3 728,456 + +2.0 728,457 - +0.1 728,482 + -0.9 728,483 - -0.1 728,483 - +1.1 728,585 - -1.7
Or see this region's nucleotide sequence