Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22895 and BPHYT_RS22900 are separated by 37 nucleotides BPHYT_RS22900 and BPHYT_RS22905 are separated by 88 nucleotides BPHYT_RS22905 and BPHYT_RS22910 are separated by 24 nucleotides BPHYT_RS22910 and BPHYT_RS22915 are separated by 46 nucleotides
BPHYT_RS22895: BPHYT_RS22895 - peptidase A24, at 696,070 to 696,606
_RS22895
BPHYT_RS22900: BPHYT_RS22900 - pilus assembly protein CpaB, at 696,644 to 697,477
_RS22900
BPHYT_RS22905: BPHYT_RS22905 - secretin, at 697,566 to 699,353
_RS22905
BPHYT_RS22910: BPHYT_RS22910 - hypothetical protein, at 699,378 to 699,671
_RS22910
BPHYT_RS22915: BPHYT_RS22915 - pilus assembly protein CpaE, at 699,718 to 700,920
_RS22915
Position (kb) 697
698
699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 696.572 kb on + strand at 696.573 kb on - strand at 697.695 kb on + strand at 697.695 kb on + strand at 697.901 kb on + strand, within BPHYT_RS22905 at 697.902 kb on - strand, within BPHYT_RS22905 at 698.023 kb on - strand, within BPHYT_RS22905 at 698.492 kb on + strand, within BPHYT_RS22905 at 698.706 kb on + strand, within BPHYT_RS22905 at 698.707 kb on - strand, within BPHYT_RS22905 at 698.707 kb on - strand, within BPHYT_RS22905 at 698.769 kb on + strand, within BPHYT_RS22905 at 698.770 kb on - strand, within BPHYT_RS22905 at 699.186 kb on + strand at 699.352 kb on - strand at 699.594 kb on + strand, within BPHYT_RS22910 at 699.715 kb on - strand at 700.180 kb on + strand, within BPHYT_RS22915 at 700.353 kb on - strand, within BPHYT_RS22915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 696,572 + -0.5 696,573 - +0.3 697,695 + -1.1 697,695 + +0.2 697,901 + BPHYT_RS22905 0.19 -0.5 697,902 - BPHYT_RS22905 0.19 -0.7 698,023 - BPHYT_RS22905 0.26 +1.4 698,492 + BPHYT_RS22905 0.52 +0.6 698,706 + BPHYT_RS22905 0.64 +0.5 698,707 - BPHYT_RS22905 0.64 +0.8 698,707 - BPHYT_RS22905 0.64 +0.3 698,769 + BPHYT_RS22905 0.67 -0.3 698,770 - BPHYT_RS22905 0.67 +0.7 699,186 + -2.5 699,352 - -0.2 699,594 + BPHYT_RS22910 0.73 -0.4 699,715 - -0.5 700,180 + BPHYT_RS22915 0.38 +0.1 700,353 - BPHYT_RS22915 0.53 -1.1
Or see this region's nucleotide sequence