Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotides BPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotides BPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotides
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958
_RS22680
BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869
_RS22685
BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295
_RS22690
Position (kb) 644
645 Strain fitness (log2 ratio) -1
0
1
2 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.748 kb on + strand, within BPHYT_RS22680 at 644.809 kb on - strand, within BPHYT_RS22680 at 644.851 kb on + strand, within BPHYT_RS22680 at 644.902 kb on + strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.906 kb on + strand, within BPHYT_RS22680 at 644.907 kb on - strand, within BPHYT_RS22680 at 644.938 kb on - strand at 645.225 kb on + strand, within BPHYT_RS22685 at 645.225 kb on + strand, within BPHYT_RS22685 at 645.696 kb on + strand, within BPHYT_RS22685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 644,575 + BPHYT_RS22680 0.16 +0.6 644,575 + BPHYT_RS22680 0.16 -0.1 644,748 + BPHYT_RS22680 0.54 +0.3 644,809 - BPHYT_RS22680 0.67 +0.4 644,851 + BPHYT_RS22680 0.76 +2.3 644,902 + BPHYT_RS22680 0.88 +0.5 644,903 - BPHYT_RS22680 0.88 +0.6 644,903 - BPHYT_RS22680 0.88 -0.2 644,903 - BPHYT_RS22680 0.88 +0.6 644,906 + BPHYT_RS22680 0.88 +0.1 644,907 - BPHYT_RS22680 0.89 -0.6 644,938 - -0.5 645,225 + BPHYT_RS22685 0.30 +1.3 645,225 + BPHYT_RS22685 0.30 +0.6 645,696 + BPHYT_RS22685 0.81 -0.3
Or see this region's nucleotide sequence