Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21555 and BPHYT_RS21560 are separated by 258 nucleotides BPHYT_RS21560 and BPHYT_RS21565 are separated by 9 nucleotides
BPHYT_RS21555: BPHYT_RS21555 - beta alanine--pyruvate aminotransferase, at 394,320 to 395,648
_RS21555
BPHYT_RS21560: BPHYT_RS21560 - GntR family transcriptional regulator, at 395,907 to 397,322
_RS21560
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 395.536 kb on + strand at 395.539 kb on + strand at 395.540 kb on - strand at 395.651 kb on + strand at 395.652 kb on - strand at 395.724 kb on + strand at 395.724 kb on + strand at 395.724 kb on + strand at 395.835 kb on + strand at 395.835 kb on + strand at 395.860 kb on - strand at 395.860 kb on - strand at 395.860 kb on - strand at 395.917 kb on + strand at 395.918 kb on - strand at 396.084 kb on + strand, within BPHYT_RS21560 at 396.085 kb on - strand, within BPHYT_RS21560 at 396.085 kb on - strand, within BPHYT_RS21560 at 396.354 kb on + strand, within BPHYT_RS21560 at 396.840 kb on + strand, within BPHYT_RS21560 at 396.888 kb on + strand, within BPHYT_RS21560 at 397.190 kb on + strand at 397.213 kb on - strand at 397.213 kb on - strand at 397.258 kb on + strand at 397.259 kb on - strand at 397.292 kb on + strand at 397.320 kb on + strand at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 395,536 + +1.3 395,539 + +2.5 395,540 - +0.9 395,651 + +2.7 395,652 - -1.7 395,724 + +0.0 395,724 + +0.4 395,724 + -0.0 395,835 + -1.3 395,835 + -0.5 395,860 - -0.2 395,860 - +2.1 395,860 - -0.1 395,917 + -0.6 395,918 - +0.8 396,084 + BPHYT_RS21560 0.12 +1.3 396,085 - BPHYT_RS21560 0.13 +0.3 396,085 - BPHYT_RS21560 0.13 -0.3 396,354 + BPHYT_RS21560 0.32 -0.0 396,840 + BPHYT_RS21560 0.66 -0.5 396,888 + BPHYT_RS21560 0.69 +1.2 397,190 + +1.0 397,213 - -1.1 397,213 - +1.7 397,258 + -3.3 397,259 - -0.7 397,292 + +3.1 397,320 + -1.5 397,499 - BPHYT_RS21565 0.27 -0.3 397,534 + BPHYT_RS21565 0.32 +2.7 397,534 + BPHYT_RS21565 0.32 -1.6 397,534 + BPHYT_RS21565 0.32 -2.1 397,693 + BPHYT_RS21565 0.58 -0.6 397,732 + BPHYT_RS21565 0.64 -1.3 397,732 + BPHYT_RS21565 0.64 -0.2 397,733 - BPHYT_RS21565 0.64 -0.4 397,948 + -0.4 397,948 + -0.6 397,948 + +2.7 397,949 - +1.1 397,997 - +0.4 398,167 + -0.1 398,168 - -0.3 398,168 - +0.4 398,170 - +0.4
Or see this region's nucleotide sequence