Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04060 and BPHYT_RS04065 are separated by 59 nucleotides BPHYT_RS04065 and BPHYT_RS04070 are separated by 110 nucleotides BPHYT_RS04070 and BPHYT_RS04075 are separated by 467 nucleotides
BPHYT_RS04060: BPHYT_RS04060 - glycosyl transferase, at 926,489 to 927,562
_RS04060
BPHYT_RS04065: BPHYT_RS04065 - hypothetical protein, at 927,622 to 928,833
_RS04065
BPHYT_RS04070: BPHYT_RS04070 - hypothetical protein, at 928,944 to 929,357
_RS04070
BPHYT_RS04075: BPHYT_RS04075 - hypothetical protein, at 929,825 to 930,220
_RS04075
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 926.813 kb on + strand, within BPHYT_RS04060 at 927.116 kb on + strand, within BPHYT_RS04060 at 927.117 kb on - strand, within BPHYT_RS04060 at 927.144 kb on - strand, within BPHYT_RS04060 at 927.646 kb on + strand at 927.646 kb on + strand at 927.646 kb on + strand at 927.647 kb on - strand at 927.804 kb on + strand, within BPHYT_RS04065 at 927.804 kb on + strand, within BPHYT_RS04065 at 927.805 kb on - strand, within BPHYT_RS04065 at 928.475 kb on + strand, within BPHYT_RS04065 at 928.926 kb on - strand at 929.483 kb on - strand at 929.506 kb on + strand at 929.507 kb on - strand at 929.587 kb on - strand at 929.682 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 926,813 + BPHYT_RS04060 0.30 +0.1 927,116 + BPHYT_RS04060 0.58 -0.5 927,117 - BPHYT_RS04060 0.58 +1.3 927,144 - BPHYT_RS04060 0.61 -1.2 927,646 + -0.7 927,646 + -0.1 927,646 + -0.8 927,647 - -0.3 927,804 + BPHYT_RS04065 0.15 -0.7 927,804 + BPHYT_RS04065 0.15 +0.2 927,805 - BPHYT_RS04065 0.15 -0.5 928,475 + BPHYT_RS04065 0.70 -1.2 928,926 - -3.5 929,483 - -0.2 929,506 + -0.2 929,507 - -0.3 929,587 - -0.1 929,682 + +0.2
Or see this region's nucleotide sequence