Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02415 and BPHYT_RS02420 are separated by 13 nucleotides BPHYT_RS02420 and BPHYT_RS02425 overlap by 29 nucleotides BPHYT_RS02425 and BPHYT_RS02430 are separated by 16 nucleotides
BPHYT_RS02415: BPHYT_RS02415 - cytochrome C550, at 550,138 to 551,367
_RS02415
BPHYT_RS02420: BPHYT_RS02420 - cytochrome C550, at 551,381 to 552,346
_RS02420
BPHYT_RS02425: BPHYT_RS02425 - hypothetical protein, at 552,318 to 552,587
_RS02425
BPHYT_RS02430: BPHYT_RS02430 - XRE family transcriptional regulator, at 552,604 to 553,572
_RS02430
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 551.365 kb on + strand at 551.365 kb on + strand at 551.366 kb on - strand at 551.366 kb on - strand at 551.420 kb on + strand at 551.421 kb on - strand at 551.502 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.714 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.781 kb on + strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.924 kb on + strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 552.257 kb on + strand at 552.266 kb on + strand at 552.266 kb on + strand at 552.313 kb on - strand at 552.486 kb on + strand, within BPHYT_RS02425 at 552.486 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.539 kb on + strand, within BPHYT_RS02425 at 552.585 kb on + strand at 552.585 kb on + strand at 552.586 kb on - strand at 552.586 kb on - strand at 552.586 kb on - strand at 552.770 kb on + strand, within BPHYT_RS02430 at 552.771 kb on - strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.773 kb on + strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.774 kb on - strand, within BPHYT_RS02430 at 552.915 kb on - strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.182 kb on + strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430 at 553.183 kb on - strand, within BPHYT_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 551,365 + -1.3 551,365 + +0.5 551,366 - -0.1 551,366 - +0.4 551,420 + -1.0 551,421 - -0.2 551,502 - BPHYT_RS02420 0.13 -0.0 551,520 - BPHYT_RS02420 0.14 +0.9 551,520 - BPHYT_RS02420 0.14 -0.2 551,714 + BPHYT_RS02420 0.34 +0.4 551,716 + BPHYT_RS02420 0.35 +2.8 551,716 + BPHYT_RS02420 0.35 -0.7 551,781 + BPHYT_RS02420 0.41 -1.4 551,782 - BPHYT_RS02420 0.42 +0.2 551,782 - BPHYT_RS02420 0.42 +1.7 551,924 + BPHYT_RS02420 0.56 +0.3 551,925 - BPHYT_RS02420 0.56 -1.3 551,925 - BPHYT_RS02420 0.56 -0.5 552,257 + -0.8 552,266 + +0.4 552,266 + +0.2 552,313 - -0.6 552,486 + BPHYT_RS02425 0.62 -2.0 552,486 + BPHYT_RS02425 0.62 +0.8 552,539 + BPHYT_RS02425 0.82 +1.4 552,539 + BPHYT_RS02425 0.82 +0.8 552,539 + BPHYT_RS02425 0.82 -0.4 552,585 + +0.1 552,585 + -1.8 552,586 - +0.1 552,586 - +1.2 552,586 - +0.5 552,770 + BPHYT_RS02430 0.17 -0.0 552,771 - BPHYT_RS02430 0.17 -0.1 552,773 + BPHYT_RS02430 0.17 +0.3 552,773 + BPHYT_RS02430 0.17 +0.7 552,773 + BPHYT_RS02430 0.17 -0.4 552,773 + BPHYT_RS02430 0.17 +0.4 552,774 - BPHYT_RS02430 0.18 -0.5 552,774 - BPHYT_RS02430 0.18 +0.7 552,774 - BPHYT_RS02430 0.18 +1.0 552,774 - BPHYT_RS02430 0.18 +0.6 552,774 - BPHYT_RS02430 0.18 +0.0 552,915 - BPHYT_RS02430 0.32 +2.4 553,182 + BPHYT_RS02430 0.60 +1.7 553,182 + BPHYT_RS02430 0.60 -0.1 553,183 - BPHYT_RS02430 0.60 -0.8 553,183 - BPHYT_RS02430 0.60 +0.9 553,183 - BPHYT_RS02430 0.60 +0.5
Or see this region's nucleotide sequence