Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00590 and BPHYT_RS00595 are separated by 198 nucleotides BPHYT_RS00595 and BPHYT_RS00600 are separated by 164 nucleotides BPHYT_RS00600 and BPHYT_RS00605 are separated by 121 nucleotides BPHYT_RS00605 and BPHYT_RS00610 are separated by 1 nucleotides
BPHYT_RS00590: BPHYT_RS00590 - hypothetical protein, at 143,012 to 143,545
_RS00590
BPHYT_RS00595: BPHYT_RS00595 - N-acyl homoserine lactone synthase, at 143,744 to 144,283
_RS00595
BPHYT_RS00600: BPHYT_RS00600 - histidine kinase, at 144,448 to 145,002
_RS00600
BPHYT_RS00605: BPHYT_RS00605 - hypothetical protein, at 145,124 to 145,339
_RS00605
BPHYT_RS00610: BPHYT_RS00610 - general secretion pathway protein A, at 145,341 to 146,198
_RS00610
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 143.469 kb on - strand, within BPHYT_RS00590 at 143.670 kb on - strand at 143.702 kb on + strand at 143.703 kb on - strand at 143.704 kb on + strand at 143.704 kb on + strand at 143.705 kb on - strand at 143.705 kb on - strand at 143.705 kb on - strand at 143.705 kb on - strand at 143.797 kb on + strand at 143.901 kb on + strand, within BPHYT_RS00595 at 144.064 kb on + strand, within BPHYT_RS00595 at 144.083 kb on + strand, within BPHYT_RS00595 at 144.084 kb on - strand, within BPHYT_RS00595 at 144.121 kb on + strand, within BPHYT_RS00595 at 144.121 kb on + strand, within BPHYT_RS00595 at 144.354 kb on - strand at 144.354 kb on - strand at 144.412 kb on + strand at 144.539 kb on + strand, within BPHYT_RS00600 at 144.539 kb on + strand, within BPHYT_RS00600 at 144.540 kb on - strand, within BPHYT_RS00600 at 144.549 kb on + strand, within BPHYT_RS00600 at 144.619 kb on + strand, within BPHYT_RS00600 at 144.619 kb on + strand, within BPHYT_RS00600 at 144.811 kb on - strand, within BPHYT_RS00600 at 144.962 kb on + strand at 144.963 kb on - strand at 144.965 kb on + strand at 144.966 kb on - strand at 144.970 kb on + strand at 144.970 kb on + strand at 144.971 kb on - strand at 145.069 kb on - strand at 145.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 143,469 - BPHYT_RS00590 0.86 -0.6 143,670 - +1.1 143,702 + +0.1 143,703 - +2.9 143,704 + +0.5 143,704 + +1.3 143,705 - -0.6 143,705 - -2.3 143,705 - -0.9 143,705 - +0.4 143,797 + -0.8 143,901 + BPHYT_RS00595 0.29 +0.2 144,064 + BPHYT_RS00595 0.59 -1.1 144,083 + BPHYT_RS00595 0.63 +0.8 144,084 - BPHYT_RS00595 0.63 +0.2 144,121 + BPHYT_RS00595 0.70 +0.5 144,121 + BPHYT_RS00595 0.70 -0.3 144,354 - -0.6 144,354 - +1.0 144,412 + +0.2 144,539 + BPHYT_RS00600 0.16 +2.5 144,539 + BPHYT_RS00600 0.16 +0.2 144,540 - BPHYT_RS00600 0.17 +0.2 144,549 + BPHYT_RS00600 0.18 +0.2 144,619 + BPHYT_RS00600 0.31 +0.4 144,619 + BPHYT_RS00600 0.31 +0.8 144,811 - BPHYT_RS00600 0.65 +0.2 144,962 + +0.3 144,963 - +0.1 144,965 + +0.4 144,966 - -0.9 144,970 + -0.2 144,970 + -1.0 144,971 - +0.0 145,069 - +3.9 145,069 - +1.0
Or see this region's nucleotide sequence