Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00490

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00485 and BPHYT_RS00490 are separated by 48 nucleotidesBPHYT_RS00490 and BPHYT_RS00495 are separated by 18 nucleotidesBPHYT_RS00495 and BPHYT_RS00500 are separated by 68 nucleotides BPHYT_RS00485: BPHYT_RS00485 - ATPase, AAA family, at 118,048 to 119,361 _RS00485 BPHYT_RS00490: BPHYT_RS00490 - NADH dehydrogenase, at 119,410 to 120,729 _RS00490 BPHYT_RS00495: BPHYT_RS00495 - S-formylglutathione hydrolase, at 120,748 to 121,578 _RS00495 BPHYT_RS00500: BPHYT_RS00500 - hypothetical protein, at 121,647 to 122,987 _RS00500 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.430 kb on + strand, within BPHYT_RS00485at 118.431 kb on - strand, within BPHYT_RS00485at 118.565 kb on + strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.887 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.948 kb on - strand, within BPHYT_RS00485at 119.570 kb on + strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.574 kb on + strand, within BPHYT_RS00490at 119.575 kb on - strand, within BPHYT_RS00490at 119.575 kb on - strand, within BPHYT_RS00490at 119.684 kb on + strand, within BPHYT_RS00490at 119.899 kb on - strand, within BPHYT_RS00490at 119.982 kb on - strand, within BPHYT_RS00490at 119.983 kb on + strand, within BPHYT_RS00490at 119.984 kb on - strand, within BPHYT_RS00490at 120.025 kb on + strand, within BPHYT_RS00490at 120.063 kb on + strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.065 kb on + strand, within BPHYT_RS00490at 120.383 kb on + strand, within BPHYT_RS00490at 120.384 kb on - strand, within BPHYT_RS00490at 120.423 kb on - strand, within BPHYT_RS00490at 120.451 kb on - strand, within BPHYT_RS00490at 120.527 kb on + strand, within BPHYT_RS00490at 120.527 kb on + strand, within BPHYT_RS00490at 120.581 kb on + strand, within BPHYT_RS00490at 120.582 kb on - strand, within BPHYT_RS00490at 120.582 kb on - strand, within BPHYT_RS00490at 120.725 kb on - strandat 120.725 kb on - strandat 120.725 kb on - strandat 120.781 kb on - strandat 120.809 kb on + strandat 120.809 kb on + strandat 120.809 kb on + strandat 120.810 kb on - strandat 120.812 kb on + strandat 120.812 kb on + strandat 120.813 kb on - strandat 120.813 kb on - strandat 120.813 kb on - strandat 120.987 kb on - strand, within BPHYT_RS00495at 121.192 kb on + strand, within BPHYT_RS00495at 121.192 kb on + strand, within BPHYT_RS00495at 121.220 kb on + strand, within BPHYT_RS00495at 121.221 kb on - strand, within BPHYT_RS00495at 121.221 kb on - strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.226 kb on + strand, within BPHYT_RS00495at 121.227 kb on - strand, within BPHYT_RS00495at 121.227 kb on - strand, within BPHYT_RS00495at 121.271 kb on + strand, within BPHYT_RS00495at 121.298 kb on + strand, within BPHYT_RS00495at 121.416 kb on + strand, within BPHYT_RS00495at 121.439 kb on + strand, within BPHYT_RS00495at 121.529 kb on + strandat 121.529 kb on + strandat 121.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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118,430 + BPHYT_RS00485 0.29 +0.4
118,431 - BPHYT_RS00485 0.29 -0.2
118,565 + BPHYT_RS00485 0.39 -1.2
118,626 - BPHYT_RS00485 0.44 -0.7
118,626 - BPHYT_RS00485 0.44 -0.6
118,626 - BPHYT_RS00485 0.44 +0.6
118,887 + BPHYT_RS00485 0.64 -1.6
118,889 + BPHYT_RS00485 0.64 -0.5
118,889 + BPHYT_RS00485 0.64 -1.8
118,890 - BPHYT_RS00485 0.64 -1.4
118,890 - BPHYT_RS00485 0.64 -0.7
118,948 - BPHYT_RS00485 0.68 -0.8
119,570 + BPHYT_RS00490 0.12 -1.4
119,571 - BPHYT_RS00490 0.12 +0.7
119,571 - BPHYT_RS00490 0.12 +1.0
119,571 - BPHYT_RS00490 0.12 -0.0
119,574 + BPHYT_RS00490 0.12 -0.4
119,575 - BPHYT_RS00490 0.12 -0.6
119,575 - BPHYT_RS00490 0.12 +2.0
119,684 + BPHYT_RS00490 0.21 +0.0
119,899 - BPHYT_RS00490 0.37 +0.2
119,982 - BPHYT_RS00490 0.43 -0.2
119,983 + BPHYT_RS00490 0.43 +0.1
119,984 - BPHYT_RS00490 0.43 -0.8
120,025 + BPHYT_RS00490 0.47 -0.6
120,063 + BPHYT_RS00490 0.49 -0.9
120,064 - BPHYT_RS00490 0.50 +0.0
120,064 - BPHYT_RS00490 0.50 +0.7
120,064 - BPHYT_RS00490 0.50 -0.3
120,065 + BPHYT_RS00490 0.50 +0.7
120,383 + BPHYT_RS00490 0.74 -0.4
120,384 - BPHYT_RS00490 0.74 +1.8
120,423 - BPHYT_RS00490 0.77 +0.3
120,451 - BPHYT_RS00490 0.79 -0.8
120,527 + BPHYT_RS00490 0.85 +0.8
120,527 + BPHYT_RS00490 0.85 +0.1
120,581 + BPHYT_RS00490 0.89 +0.4
120,582 - BPHYT_RS00490 0.89 -0.1
120,582 - BPHYT_RS00490 0.89 -0.8
120,725 - -0.6
120,725 - +2.4
120,725 - -0.8
120,781 - -1.6
120,809 + +0.6
120,809 + +0.3
120,809 + +1.8
120,810 - -3.0
120,812 + -0.1
120,812 + -1.4
120,813 - -1.7
120,813 - -0.5
120,813 - -1.1
120,987 - BPHYT_RS00495 0.29 -0.8
121,192 + BPHYT_RS00495 0.53 -1.0
121,192 + BPHYT_RS00495 0.53 -1.1
121,220 + BPHYT_RS00495 0.57 -0.5
121,221 - BPHYT_RS00495 0.57 -0.5
121,221 - BPHYT_RS00495 0.57 -2.1
121,226 + BPHYT_RS00495 0.58 -0.1
121,226 + BPHYT_RS00495 0.58 -0.1
121,226 + BPHYT_RS00495 0.58 -0.4
121,226 + BPHYT_RS00495 0.58 +0.3
121,226 + BPHYT_RS00495 0.58 -0.6
121,226 + BPHYT_RS00495 0.58 +0.1
121,227 - BPHYT_RS00495 0.58 +0.8
121,227 - BPHYT_RS00495 0.58 +0.1
121,271 + BPHYT_RS00495 0.63 +0.1
121,298 + BPHYT_RS00495 0.66 -0.1
121,416 + BPHYT_RS00495 0.80 +0.3
121,439 + BPHYT_RS00495 0.83 +0.1
121,529 + -0.6
121,529 + +0.4
121,589 + -1.7

Or see this region's nucleotide sequence