Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00485

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00480 and BPHYT_RS00485 are separated by 57 nucleotidesBPHYT_RS00485 and BPHYT_RS00490 are separated by 48 nucleotides BPHYT_RS00480: BPHYT_RS00480 - excinuclease ABC subunit A, at 115,342 to 117,990 _RS00480 BPHYT_RS00485: BPHYT_RS00485 - ATPase, AAA family, at 118,048 to 119,361 _RS00485 BPHYT_RS00490: BPHYT_RS00490 - NADH dehydrogenase, at 119,410 to 120,729 _RS00490 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.230 kb on + strand, within BPHYT_RS00480at 117.290 kb on + strand, within BPHYT_RS00480at 117.291 kb on - strand, within BPHYT_RS00480at 117.378 kb on - strand, within BPHYT_RS00480at 117.500 kb on + strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.501 kb on - strand, within BPHYT_RS00480at 117.569 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.611 kb on + strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 117.612 kb on - strand, within BPHYT_RS00480at 118.003 kb on + strandat 118.178 kb on + strandat 118.343 kb on + strand, within BPHYT_RS00485at 118.343 kb on + strand, within BPHYT_RS00485at 118.344 kb on - strand, within BPHYT_RS00485at 118.377 kb on - strand, within BPHYT_RS00485at 118.430 kb on + strand, within BPHYT_RS00485at 118.431 kb on - strand, within BPHYT_RS00485at 118.565 kb on + strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.626 kb on - strand, within BPHYT_RS00485at 118.887 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.889 kb on + strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.890 kb on - strand, within BPHYT_RS00485at 118.948 kb on - strand, within BPHYT_RS00485at 119.570 kb on + strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.571 kb on - strand, within BPHYT_RS00490at 119.574 kb on + strand, within BPHYT_RS00490at 119.575 kb on - strand, within BPHYT_RS00490at 119.575 kb on - strand, within BPHYT_RS00490at 119.684 kb on + strand, within BPHYT_RS00490at 119.899 kb on - strand, within BPHYT_RS00490at 119.982 kb on - strand, within BPHYT_RS00490at 119.983 kb on + strand, within BPHYT_RS00490at 119.984 kb on - strand, within BPHYT_RS00490at 120.025 kb on + strand, within BPHYT_RS00490at 120.063 kb on + strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.064 kb on - strand, within BPHYT_RS00490at 120.065 kb on + strand, within BPHYT_RS00490

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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117,230 + BPHYT_RS00480 0.71 -1.6
117,290 + BPHYT_RS00480 0.74 -0.6
117,291 - BPHYT_RS00480 0.74 -0.5
117,378 - BPHYT_RS00480 0.77 -0.4
117,500 + BPHYT_RS00480 0.81 +0.4
117,501 - BPHYT_RS00480 0.82 -2.9
117,501 - BPHYT_RS00480 0.82 -0.4
117,501 - BPHYT_RS00480 0.82 -0.7
117,569 + BPHYT_RS00480 0.84 -1.2
117,611 + BPHYT_RS00480 0.86 +0.0
117,611 + BPHYT_RS00480 0.86 -0.7
117,611 + BPHYT_RS00480 0.86 -1.6
117,611 + BPHYT_RS00480 0.86 +0.3
117,611 + BPHYT_RS00480 0.86 +0.7
117,612 - BPHYT_RS00480 0.86 -0.3
117,612 - BPHYT_RS00480 0.86 +0.4
117,612 - BPHYT_RS00480 0.86 +1.2
117,612 - BPHYT_RS00480 0.86 -1.0
118,003 + -2.3
118,178 + -0.6
118,343 + BPHYT_RS00485 0.22 +0.5
118,343 + BPHYT_RS00485 0.22 -2.0
118,344 - BPHYT_RS00485 0.23 -0.1
118,377 - BPHYT_RS00485 0.25 +0.7
118,430 + BPHYT_RS00485 0.29 +0.4
118,431 - BPHYT_RS00485 0.29 -0.2
118,565 + BPHYT_RS00485 0.39 -1.2
118,626 - BPHYT_RS00485 0.44 -0.7
118,626 - BPHYT_RS00485 0.44 -0.6
118,626 - BPHYT_RS00485 0.44 +0.6
118,887 + BPHYT_RS00485 0.64 -1.6
118,889 + BPHYT_RS00485 0.64 -0.5
118,889 + BPHYT_RS00485 0.64 -1.8
118,890 - BPHYT_RS00485 0.64 -1.4
118,890 - BPHYT_RS00485 0.64 -0.7
118,948 - BPHYT_RS00485 0.68 -0.8
119,570 + BPHYT_RS00490 0.12 -1.4
119,571 - BPHYT_RS00490 0.12 +0.7
119,571 - BPHYT_RS00490 0.12 +1.0
119,571 - BPHYT_RS00490 0.12 -0.0
119,574 + BPHYT_RS00490 0.12 -0.4
119,575 - BPHYT_RS00490 0.12 -0.6
119,575 - BPHYT_RS00490 0.12 +2.0
119,684 + BPHYT_RS00490 0.21 +0.0
119,899 - BPHYT_RS00490 0.37 +0.2
119,982 - BPHYT_RS00490 0.43 -0.2
119,983 + BPHYT_RS00490 0.43 +0.1
119,984 - BPHYT_RS00490 0.43 -0.8
120,025 + BPHYT_RS00490 0.47 -0.6
120,063 + BPHYT_RS00490 0.49 -0.9
120,064 - BPHYT_RS00490 0.50 +0.0
120,064 - BPHYT_RS00490 0.50 +0.7
120,064 - BPHYT_RS00490 0.50 -0.3
120,065 + BPHYT_RS00490 0.50 +0.7

Or see this region's nucleotide sequence