Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00125 and BPHYT_RS00130 are separated by 43 nucleotides BPHYT_RS00130 and BPHYT_RS00135 are separated by 93 nucleotides BPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotides BPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotides
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139
_RS00130
BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436
_RS00135
BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917
_RS00140
BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232
_RS00145
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -1
0
1
2 at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.647 kb on - strand, within BPHYT_RS00125 at 36.717 kb on + strand, within BPHYT_RS00125 at 36.753 kb on - strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 37.070 kb on + strand at 37.403 kb on + strand, within BPHYT_RS00130 at 37.404 kb on - strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.986 kb on + strand, within BPHYT_RS00130 at 38.109 kb on + strand, within BPHYT_RS00130 at 38.110 kb on - strand, within BPHYT_RS00130 at 38.194 kb on - strand, within BPHYT_RS00130 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.310 kb on + strand, within BPHYT_RS00130 at 38.751 kb on + strand, within BPHYT_RS00130 at 38.758 kb on + strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 39.053 kb on + strand at 39.053 kb on + strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.456 kb on - strand at 39.543 kb on + strand, within BPHYT_RS00140 at 39.592 kb on - strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.902 kb on + strand at 39.903 kb on - strand at 40.038 kb on - strand at 40.038 kb on - strand at 40.043 kb on + strand at 40.044 kb on - strand at 40.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 36,073 + BPHYT_RS00125 0.13 -1.1 36,254 + BPHYT_RS00125 0.30 -0.8 36,255 - BPHYT_RS00125 0.30 -0.5 36,255 - BPHYT_RS00125 0.30 -0.5 36,647 - BPHYT_RS00125 0.67 -0.2 36,717 + BPHYT_RS00125 0.74 +0.1 36,753 - BPHYT_RS00125 0.77 -0.2 36,766 + BPHYT_RS00125 0.79 -0.3 36,766 + BPHYT_RS00125 0.79 -0.1 36,767 - BPHYT_RS00125 0.79 +0.6 36,767 - BPHYT_RS00125 0.79 +0.6 37,070 + -0.8 37,403 + BPHYT_RS00130 0.18 -0.6 37,404 - BPHYT_RS00130 0.18 +0.8 37,724 + BPHYT_RS00130 0.33 +0.2 37,724 + BPHYT_RS00130 0.33 +0.6 37,986 + BPHYT_RS00130 0.45 -0.3 38,109 + BPHYT_RS00130 0.51 -1.1 38,110 - BPHYT_RS00130 0.51 +0.0 38,194 - BPHYT_RS00130 0.55 +0.1 38,285 - BPHYT_RS00130 0.59 -0.9 38,285 - BPHYT_RS00130 0.59 -0.1 38,310 + BPHYT_RS00130 0.61 +0.2 38,751 + BPHYT_RS00130 0.82 -0.0 38,758 + BPHYT_RS00130 0.82 -0.1 38,759 - BPHYT_RS00130 0.82 -0.3 38,759 - BPHYT_RS00130 0.82 -0.2 39,053 + -0.8 39,053 + +0.7 39,054 - +0.1 39,054 - -1.3 39,054 - -1.3 39,054 - -0.2 39,455 + +2.6 39,455 + -0.0 39,455 + +0.6 39,456 - +0.7 39,543 + BPHYT_RS00140 0.13 -0.4 39,592 - BPHYT_RS00140 0.25 -1.3 39,638 + BPHYT_RS00140 0.35 -0.0 39,638 + BPHYT_RS00140 0.35 -1.3 39,638 + BPHYT_RS00140 0.35 +0.1 39,902 + +0.1 39,903 - +0.4 40,038 - -1.2 40,038 - +1.7 40,043 + -0.9 40,044 - +0.5 40,044 - -0.7
Or see this region's nucleotide sequence