Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36040 and BPHYT_RS36045 overlap by 4 nucleotides BPHYT_RS36045 and BPHYT_RS36050 are separated by 20 nucleotides BPHYT_RS36050 and BPHYT_RS36055 are separated by 8 nucleotides BPHYT_RS36055 and BPHYT_RS36060 are separated by 9 nucleotides BPHYT_RS36060 and BPHYT_RS36065 are separated by 7 nucleotides BPHYT_RS36065 and BPHYT_RS36070 overlap by 1 nucleotides
BPHYT_RS36040: BPHYT_RS36040 - hypothetical protein, at 36,028 to 36,657
_RS36040
BPHYT_RS36045: BPHYT_RS36045 - hypothetical protein, at 36,654 to 36,911
_RS36045
BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393
_RS36050
BPHYT_RS36055: BPHYT_RS36055 - hypothetical protein, at 37,402 to 37,695
_RS36055
BPHYT_RS36060: BPHYT_RS36060 - hypothetical protein, at 37,705 to 38,094
_RS36060
BPHYT_RS36065: BPHYT_RS36065 - hypothetical protein, at 38,102 to 38,296
_RS36065
BPHYT_RS36070: BPHYT_RS36070 - hypothetical protein, at 38,296 to 38,571
_RS36070
Position (kb) 37
38 Strain fitness (log2 ratio) -1
0
1 at 37.058 kb on - strand, within BPHYT_RS36050 at 37.095 kb on + strand, within BPHYT_RS36050 at 37.096 kb on - strand, within BPHYT_RS36050 at 37.190 kb on - strand, within BPHYT_RS36050 at 37.291 kb on + strand, within BPHYT_RS36050 at 37.393 kb on + strand at 37.393 kb on + strand at 37.394 kb on - strand at 37.437 kb on + strand, within BPHYT_RS36055 at 37.695 kb on + strand at 37.865 kb on + strand, within BPHYT_RS36060 at 38.051 kb on + strand, within BPHYT_RS36060 at 38.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 37,058 - BPHYT_RS36050 0.27 -0.0 37,095 + BPHYT_RS36050 0.35 +0.2 37,096 - BPHYT_RS36050 0.35 +0.0 37,190 - BPHYT_RS36050 0.56 +0.8 37,291 + BPHYT_RS36050 0.78 -0.3 37,393 + -1.2 37,393 + -1.3 37,394 - +0.4 37,437 + BPHYT_RS36055 0.12 -1.2 37,695 + -0.7 37,865 + BPHYT_RS36060 0.41 +0.3 38,051 + BPHYT_RS36060 0.89 +1.2 38,098 - -1.2
Or see this region's nucleotide sequence