Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35460 and BPHYT_RS35465 are separated by 1 nucleotides BPHYT_RS35465 and BPHYT_RS35470 are separated by 27 nucleotides BPHYT_RS35470 and BPHYT_RS35475 overlap by 4 nucleotides BPHYT_RS35475 and BPHYT_RS35480 overlap by 4 nucleotides
BPHYT_RS35460: BPHYT_RS35460 - acyl-CoA dehydrogenase, at 3,556,125 to 3,557,333
_RS35460
BPHYT_RS35465: BPHYT_RS35465 - enoyl-CoA hydratase, at 3,557,335 to 3,558,186
_RS35465
BPHYT_RS35470: BPHYT_RS35470 - MarR family transcriptional regulator, at 3,558,214 to 3,558,777
_RS35470
BPHYT_RS35475: BPHYT_RS35475 - 3-hydroxyacyl-CoA dehydrogenase, at 3,558,774 to 3,559,547
_RS35475
BPHYT_RS35480: BPHYT_RS35480 - salicylyl-CoA 5-hydroxylase, at 3,559,544 to 3,561,916
_RS35480
Position (kb) 3558
3559 Strain fitness (log2 ratio) -1
0
1 at 3557.250 kb on - strand at 3557.737 kb on - strand, within BPHYT_RS35465 at 3557.737 kb on - strand, within BPHYT_RS35465 at 3557.996 kb on + strand, within BPHYT_RS35465 at 3557.997 kb on - strand, within BPHYT_RS35465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,557,250 - +0.5 3,557,737 - BPHYT_RS35465 0.47 -0.4 3,557,737 - BPHYT_RS35465 0.47 +1.6 3,557,996 + BPHYT_RS35465 0.78 +0.1 3,557,997 - BPHYT_RS35465 0.78 -0.2
Or see this region's nucleotide sequence