Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33650 and BPHYT_RS33655 are separated by 172 nucleotides BPHYT_RS33655 and BPHYT_RS33660 are separated by 174 nucleotides BPHYT_RS33660 and BPHYT_RS33665 are separated by 187 nucleotides
BPHYT_RS33650: BPHYT_RS33650 - membrane protein, at 3,134,133 to 3,134,939
_RS33650
BPHYT_RS33655: BPHYT_RS33655 - MarR family transcriptional regulator, at 3,135,112 to 3,135,564
_RS33655
BPHYT_RS33660: BPHYT_RS33660 - OsmC family protein, at 3,135,739 to 3,136,158
_RS33660
BPHYT_RS33665: BPHYT_RS33665 - deoxyribodipyrimidine photo-lyase, at 3,136,346 to 3,137,845
_RS33665
Position (kb) 3135
3136
3137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3134.854 kb on - strand, within BPHYT_RS33650 at 3134.875 kb on - strand at 3135.048 kb on + strand at 3135.048 kb on + strand at 3135.048 kb on + strand at 3135.199 kb on + strand, within BPHYT_RS33655 at 3135.200 kb on - strand, within BPHYT_RS33655 at 3135.233 kb on - strand, within BPHYT_RS33655 at 3135.241 kb on + strand, within BPHYT_RS33655 at 3135.241 kb on + strand, within BPHYT_RS33655 at 3135.404 kb on - strand, within BPHYT_RS33655 at 3135.550 kb on + strand at 3135.551 kb on - strand at 3135.551 kb on - strand at 3135.551 kb on - strand at 3135.562 kb on + strand at 3135.588 kb on + strand at 3135.589 kb on - strand at 3135.751 kb on + strand at 3135.752 kb on - strand at 3136.181 kb on - strand at 3136.324 kb on - strand at 3136.324 kb on - strand at 3136.332 kb on + strand at 3136.333 kb on - strand at 3136.333 kb on - strand at 3136.333 kb on - strand at 3136.336 kb on + strand at 3136.336 kb on + strand at 3136.336 kb on + strand at 3136.337 kb on - strand at 3136.337 kb on - strand at 3136.437 kb on - strand at 3136.440 kb on - strand at 3136.474 kb on - strand at 3136.474 kb on - strand at 3136.602 kb on + strand, within BPHYT_RS33665 at 3136.603 kb on - strand, within BPHYT_RS33665 at 3136.603 kb on - strand, within BPHYT_RS33665 at 3136.634 kb on + strand, within BPHYT_RS33665 at 3136.923 kb on - strand, within BPHYT_RS33665 at 3137.084 kb on + strand, within BPHYT_RS33665 at 3137.084 kb on + strand, within BPHYT_RS33665 at 3137.126 kb on + strand, within BPHYT_RS33665 at 3137.127 kb on - strand, within BPHYT_RS33665 at 3137.127 kb on - strand, within BPHYT_RS33665
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,134,854 - BPHYT_RS33650 0.89 -0.1 3,134,875 - -0.5 3,135,048 + -0.1 3,135,048 + +0.1 3,135,048 + -1.3 3,135,199 + BPHYT_RS33655 0.19 -2.9 3,135,200 - BPHYT_RS33655 0.19 -2.5 3,135,233 - BPHYT_RS33655 0.27 -0.1 3,135,241 + BPHYT_RS33655 0.28 -2.2 3,135,241 + BPHYT_RS33655 0.28 -0.5 3,135,404 - BPHYT_RS33655 0.64 -0.8 3,135,550 + -0.1 3,135,551 - +0.1 3,135,551 - +2.6 3,135,551 - +0.9 3,135,562 + +0.3 3,135,588 + +0.6 3,135,589 - +0.3 3,135,751 + -1.7 3,135,752 - +0.2 3,136,181 - +0.0 3,136,324 - -1.3 3,136,324 - +0.1 3,136,332 + +0.2 3,136,333 - +0.6 3,136,333 - -0.4 3,136,333 - +0.5 3,136,336 + -0.4 3,136,336 + -1.0 3,136,336 + +0.0 3,136,337 - +0.8 3,136,337 - -0.3 3,136,437 - -0.1 3,136,440 - -1.1 3,136,474 - +0.2 3,136,474 - +0.0 3,136,602 + BPHYT_RS33665 0.17 +0.7 3,136,603 - BPHYT_RS33665 0.17 +0.8 3,136,603 - BPHYT_RS33665 0.17 +0.2 3,136,634 + BPHYT_RS33665 0.19 -0.1 3,136,923 - BPHYT_RS33665 0.38 -1.1 3,137,084 + BPHYT_RS33665 0.49 -0.1 3,137,084 + BPHYT_RS33665 0.49 -0.4 3,137,126 + BPHYT_RS33665 0.52 -0.1 3,137,127 - BPHYT_RS33665 0.52 +0.4 3,137,127 - BPHYT_RS33665 0.52 +5.9
Or see this region's nucleotide sequence