Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28145 and BPHYT_RS28150 are separated by 199 nucleotides BPHYT_RS28150 and BPHYT_RS28155 are separated by 8 nucleotides BPHYT_RS28155 and BPHYT_RS28160 are separated by 75 nucleotides
BPHYT_RS28145: BPHYT_RS28145 - diguanylate cyclase, at 1,871,952 to 1,873,133
_RS28145
BPHYT_RS28150: BPHYT_RS28150 - methylmalonate-semialdehyde dehydrogenase, at 1,873,333 to 1,874,850
_RS28150
BPHYT_RS28155: BPHYT_RS28155 - hypothetical protein, at 1,874,859 to 1,875,125
_RS28155
BPHYT_RS28160: BPHYT_RS28160 - MFS transporter, at 1,875,201 to 1,876,445
_RS28160
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -1
0
1
2 at 1872.391 kb on - strand, within BPHYT_RS28145 at 1872.559 kb on + strand, within BPHYT_RS28145 at 1872.560 kb on - strand, within BPHYT_RS28145 at 1872.560 kb on - strand at 1872.643 kb on + strand, within BPHYT_RS28145 at 1872.781 kb on - strand, within BPHYT_RS28145 at 1873.023 kb on + strand at 1873.024 kb on - strand at 1873.101 kb on - strand at 1873.108 kb on + strand at 1873.109 kb on - strand at 1873.152 kb on - strand at 1873.305 kb on - strand at 1873.406 kb on + strand at 1873.407 kb on - strand at 1873.414 kb on - strand at 1873.581 kb on + strand, within BPHYT_RS28150 at 1874.007 kb on - strand, within BPHYT_RS28150 at 1874.133 kb on - strand, within BPHYT_RS28150 at 1874.565 kb on + strand, within BPHYT_RS28150 at 1874.758 kb on + strand at 1874.759 kb on - strand at 1874.955 kb on - strand, within BPHYT_RS28155 at 1874.967 kb on - strand, within BPHYT_RS28155 at 1875.097 kb on + strand, within BPHYT_RS28155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,872,391 - BPHYT_RS28145 0.37 -0.4 1,872,559 + BPHYT_RS28145 0.51 +0.3 1,872,560 - BPHYT_RS28145 0.51 +0.8 1,872,560 - +2.6 1,872,643 + BPHYT_RS28145 0.58 +1.3 1,872,781 - BPHYT_RS28145 0.70 +1.1 1,873,023 + -0.0 1,873,024 - -0.6 1,873,101 - -1.1 1,873,108 + -1.5 1,873,109 - +0.7 1,873,152 - +1.6 1,873,305 - -0.6 1,873,406 + -1.2 1,873,407 - +0.4 1,873,414 - -1.1 1,873,581 + BPHYT_RS28150 0.16 -1.3 1,874,007 - BPHYT_RS28150 0.44 -0.5 1,874,133 - BPHYT_RS28150 0.53 +0.6 1,874,565 + BPHYT_RS28150 0.81 -0.1 1,874,758 + -0.5 1,874,759 - +0.3 1,874,955 - BPHYT_RS28155 0.36 +0.1 1,874,967 - BPHYT_RS28155 0.40 +1.3 1,875,097 + BPHYT_RS28155 0.89 -1.0
Or see this region's nucleotide sequence