Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23550 and BPHYT_RS23555 are separated by 15 nucleotides BPHYT_RS23555 and BPHYT_RS23560 are separated by 424 nucleotides BPHYT_RS23560 and BPHYT_RS23565 are separated by 33 nucleotides
BPHYT_RS23550: BPHYT_RS23550 - multidrug transporter, at 852,555 to 855,680
_RS23550
BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925
_RS23555
BPHYT_RS23560: BPHYT_RS23560 - hypothetical protein, at 857,350 to 857,571
_RS23560
BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398
_RS23565
Position (kb) 855
856
857 Strain fitness (log2 ratio) -1
0
1 at 855.091 kb on + strand, within BPHYT_RS23550 at 855.529 kb on + strand at 855.697 kb on + strand at 855.698 kb on - strand at 855.740 kb on + strand at 855.930 kb on - strand, within BPHYT_RS23555 at 855.930 kb on - strand, within BPHYT_RS23555 at 855.949 kb on + strand, within BPHYT_RS23555 at 855.950 kb on - strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.319 kb on - strand, within BPHYT_RS23555 at 856.471 kb on + strand, within BPHYT_RS23555 at 856.493 kb on + strand, within BPHYT_RS23555 at 856.926 kb on - strand at 857.005 kb on + strand at 857.005 kb on + strand at 857.072 kb on + strand at 857.233 kb on + strand at 857.308 kb on + strand at 857.671 kb on - strand at 857.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 855,091 + BPHYT_RS23550 0.81 -0.0 855,529 + +0.6 855,697 + +1.5 855,698 - +1.2 855,740 + +0.3 855,930 - BPHYT_RS23555 0.19 -0.0 855,930 - BPHYT_RS23555 0.19 -0.1 855,949 + BPHYT_RS23555 0.21 +1.0 855,950 - BPHYT_RS23555 0.21 -0.7 856,318 + BPHYT_RS23555 0.51 +0.9 856,318 + BPHYT_RS23555 0.51 +1.0 856,319 - BPHYT_RS23555 0.51 +0.6 856,471 + BPHYT_RS23555 0.63 -0.7 856,493 + BPHYT_RS23555 0.65 +0.2 856,926 - -1.0 857,005 + +1.1 857,005 + +0.4 857,072 + -1.1 857,233 + +0.2 857,308 + -0.1 857,671 - +0.6 857,728 - -0.2
Or see this region's nucleotide sequence