Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22400 and BPHYT_RS22405 are separated by 57 nucleotides BPHYT_RS22405 and BPHYT_RS22410 are separated by 70 nucleotides BPHYT_RS22410 and BPHYT_RS22415 overlap by 4 nucleotides BPHYT_RS22415 and BPHYT_RS22420 are separated by 328 nucleotides BPHYT_RS22420 and BPHYT_RS22425 are separated by 32 nucleotides
BPHYT_RS22400: BPHYT_RS22400 - hypothetical protein, at 581,632 to 581,958
_RS22400
BPHYT_RS22405: BPHYT_RS22405 - HxlR family transcriptional regulator, at 582,016 to 582,417
_RS22405
BPHYT_RS22410: BPHYT_RS22410 - hypothetical protein, at 582,488 to 582,913
_RS22410
BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700
_RS22415
BPHYT_RS22420: BPHYT_RS22420 - membrane protein, at 585,029 to 585,217
_RS22420
BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665
_RS22425
Position (kb) 582
583
584
585 Strain fitness (log2 ratio) -1
0
1
2 at 581.926 kb on + strand at 581.944 kb on - strand at 581.975 kb on + strand at 581.975 kb on + strand at 581.976 kb on - strand at 581.979 kb on - strand at 582.006 kb on - strand at 582.017 kb on + strand at 582.417 kb on + strand at 582.538 kb on + strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.552 kb on + strand, within BPHYT_RS22410 at 582.721 kb on - strand, within BPHYT_RS22410 at 582.733 kb on - strand, within BPHYT_RS22410 at 583.038 kb on - strand at 583.249 kb on - strand, within BPHYT_RS22415 at 583.296 kb on - strand, within BPHYT_RS22415 at 583.848 kb on - strand, within BPHYT_RS22415 at 583.892 kb on + strand, within BPHYT_RS22415 at 583.893 kb on - strand, within BPHYT_RS22415 at 583.897 kb on - strand, within BPHYT_RS22415 at 583.923 kb on - strand, within BPHYT_RS22415 at 583.946 kb on + strand, within BPHYT_RS22415 at 584.468 kb on + strand, within BPHYT_RS22415 at 584.469 kb on - strand, within BPHYT_RS22415 at 584.690 kb on + strand at 584.690 kb on + strand at 585.148 kb on - strand, within BPHYT_RS22420 at 585.339 kb on + strand at 585.465 kb on - strand, within BPHYT_RS22425 at 585.465 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.582 kb on - strand, within BPHYT_RS22425
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 581,926 + +1.7 581,944 - +1.2 581,975 + -0.5 581,975 + +0.9 581,976 - +0.0 581,979 - +0.7 582,006 - +0.3 582,017 + +0.4 582,417 + +0.8 582,538 + BPHYT_RS22410 0.12 +0.9 582,539 - BPHYT_RS22410 0.12 -0.6 582,539 - BPHYT_RS22410 0.12 -0.5 582,552 + BPHYT_RS22410 0.15 +0.8 582,721 - BPHYT_RS22410 0.55 +0.3 582,733 - BPHYT_RS22410 0.58 -0.7 583,038 - +0.3 583,249 - BPHYT_RS22415 0.19 +0.5 583,296 - BPHYT_RS22415 0.22 +0.4 583,848 - BPHYT_RS22415 0.52 -0.1 583,892 + BPHYT_RS22415 0.55 -0.0 583,893 - BPHYT_RS22415 0.55 -0.3 583,897 - BPHYT_RS22415 0.55 +0.4 583,923 - BPHYT_RS22415 0.57 +0.8 583,946 + BPHYT_RS22415 0.58 +1.2 584,468 + BPHYT_RS22415 0.87 -0.1 584,469 - BPHYT_RS22415 0.87 +0.1 584,690 + -0.3 584,690 + +0.8 585,148 - BPHYT_RS22420 0.63 +2.0 585,339 + -0.5 585,465 - BPHYT_RS22425 0.15 -0.3 585,465 - BPHYT_RS22425 0.15 +1.1 585,507 - BPHYT_RS22425 0.18 +1.8 585,507 - BPHYT_RS22425 0.18 +1.0 585,582 - BPHYT_RS22425 0.23 -0.4
Or see this region's nucleotide sequence