Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22220 and BPHYT_RS22225 are separated by 158 nucleotides BPHYT_RS22225 and BPHYT_RS22230 are separated by 109 nucleotides BPHYT_RS22230 and BPHYT_RS22235 overlap by 4 nucleotides
BPHYT_RS22220: BPHYT_RS22220 - sulfatase, at 542,836 to 544,782
_RS22220
BPHYT_RS22225: BPHYT_RS22225 - hypothetical protein, at 544,941 to 545,489
_RS22225
BPHYT_RS22230: BPHYT_RS22230 - LuxR family transcriptional regulator, at 545,599 to 546,246
_RS22230
BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658
_RS22235
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 543.959 kb on + strand, within BPHYT_RS22220 at 543.960 kb on - strand, within BPHYT_RS22220 at 544.062 kb on - strand, within BPHYT_RS22220 at 544.083 kb on - strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.238 kb on + strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.239 kb on - strand, within BPHYT_RS22220 at 544.242 kb on + strand, within BPHYT_RS22220 at 544.243 kb on - strand, within BPHYT_RS22220 at 544.312 kb on - strand, within BPHYT_RS22220 at 544.330 kb on - strand, within BPHYT_RS22220 at 544.331 kb on + strand, within BPHYT_RS22220 at 544.332 kb on - strand, within BPHYT_RS22220 at 544.332 kb on - strand, within BPHYT_RS22220 at 544.657 kb on + strand at 544.800 kb on - strand at 544.800 kb on - strand at 544.861 kb on + strand at 544.879 kb on + strand at 544.880 kb on - strand at 545.116 kb on + strand, within BPHYT_RS22225 at 545.117 kb on - strand, within BPHYT_RS22225 at 545.233 kb on + strand, within BPHYT_RS22225 at 545.234 kb on - strand, within BPHYT_RS22225 at 545.435 kb on + strand at 545.924 kb on + strand, within BPHYT_RS22230 at 545.925 kb on - strand, within BPHYT_RS22230 at 546.456 kb on + strand, within BPHYT_RS22235 at 546.457 kb on - strand, within BPHYT_RS22235 at 546.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 543,959 + BPHYT_RS22220 0.58 +0.2 543,960 - BPHYT_RS22220 0.58 -0.8 544,062 - BPHYT_RS22220 0.63 -0.2 544,083 - BPHYT_RS22220 0.64 +0.5 544,238 + BPHYT_RS22220 0.72 -1.6 544,238 + BPHYT_RS22220 0.72 +1.3 544,238 + BPHYT_RS22220 0.72 +0.3 544,239 - BPHYT_RS22220 0.72 +1.1 544,239 - BPHYT_RS22220 0.72 +0.3 544,239 - BPHYT_RS22220 0.72 +1.0 544,242 + BPHYT_RS22220 0.72 +1.7 544,243 - BPHYT_RS22220 0.72 -0.3 544,312 - BPHYT_RS22220 0.76 -0.0 544,330 - BPHYT_RS22220 0.77 +0.5 544,331 + BPHYT_RS22220 0.77 +0.8 544,332 - BPHYT_RS22220 0.77 +0.6 544,332 - BPHYT_RS22220 0.77 -0.2 544,657 + +0.2 544,800 - -0.7 544,800 - -1.0 544,861 + -0.5 544,879 + +0.2 544,880 - +0.4 545,116 + BPHYT_RS22225 0.32 +2.4 545,117 - BPHYT_RS22225 0.32 +2.1 545,233 + BPHYT_RS22225 0.53 +3.2 545,234 - BPHYT_RS22225 0.53 +1.7 545,435 + +0.9 545,924 + BPHYT_RS22230 0.50 +0.4 545,925 - BPHYT_RS22230 0.50 +0.2 546,456 + BPHYT_RS22235 0.15 -0.4 546,457 - BPHYT_RS22235 0.15 -1.9 546,477 + +1.5
Or see this region's nucleotide sequence