Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotides BPHYT_RS22065 and BPHYT_RS22070 are separated by 514 nucleotides
BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692
_RS22060
BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383
_RS22065
BPHYT_RS22070: BPHYT_RS22070 - DNA-binding protein, at 508,898 to 509,350
_RS22070
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.007 kb on - strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.213 kb on + strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.319 kb on - strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.382 kb on - strand, within BPHYT_RS22060 at 506.420 kb on + strand, within BPHYT_RS22060 at 506.525 kb on - strand, within BPHYT_RS22060 at 506.690 kb on + strand at 506.690 kb on + strand at 506.740 kb on - strand at 506.831 kb on - strand at 506.850 kb on + strand at 506.851 kb on - strand at 506.963 kb on - strand at 507.103 kb on + strand, within BPHYT_RS22065 at 507.103 kb on + strand, within BPHYT_RS22065 at 507.589 kb on + strand, within BPHYT_RS22065 at 507.701 kb on - strand, within BPHYT_RS22065 at 507.811 kb on + strand, within BPHYT_RS22065 at 507.887 kb on - strand at 507.935 kb on - strand, within BPHYT_RS22065 at 507.959 kb on - strand, within BPHYT_RS22065 at 508.085 kb on - strand, within BPHYT_RS22065 at 508.268 kb on - strand at 508.315 kb on - strand at 508.381 kb on + strand at 508.466 kb on - strand at 508.573 kb on - strand at 508.676 kb on - strand at 508.685 kb on + strand at 508.788 kb on - strand at 508.788 kb on - strand at 509.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 506,006 + BPHYT_RS22060 0.55 -0.3 506,006 + BPHYT_RS22060 0.55 +0.3 506,006 + BPHYT_RS22060 0.55 -0.0 506,006 + BPHYT_RS22060 0.55 -0.3 506,006 + BPHYT_RS22060 0.55 +0.1 506,006 + BPHYT_RS22060 0.55 -0.1 506,006 + BPHYT_RS22060 0.55 -0.3 506,006 + BPHYT_RS22060 0.55 -0.4 506,006 + BPHYT_RS22060 0.55 +0.3 506,007 - BPHYT_RS22060 0.56 +1.2 506,165 + BPHYT_RS22060 0.66 -0.7 506,165 + BPHYT_RS22060 0.66 -0.7 506,213 + BPHYT_RS22060 0.69 +1.0 506,214 - BPHYT_RS22060 0.69 +0.1 506,214 - BPHYT_RS22060 0.69 +0.4 506,214 - BPHYT_RS22060 0.69 -0.1 506,319 - BPHYT_RS22060 0.76 +0.3 506,327 + BPHYT_RS22060 0.76 -1.2 506,327 + BPHYT_RS22060 0.76 +0.4 506,382 - BPHYT_RS22060 0.80 +2.3 506,420 + BPHYT_RS22060 0.82 +1.5 506,525 - BPHYT_RS22060 0.89 +0.2 506,690 + -0.4 506,690 + +0.5 506,740 - -1.1 506,831 - +0.7 506,850 + +1.7 506,851 - +2.3 506,963 - +1.0 507,103 + BPHYT_RS22065 0.13 +0.8 507,103 + BPHYT_RS22065 0.13 -0.5 507,589 + BPHYT_RS22065 0.46 -0.5 507,701 - BPHYT_RS22065 0.54 -0.1 507,811 + BPHYT_RS22065 0.61 +0.2 507,887 - +0.5 507,935 - BPHYT_RS22065 0.70 -0.2 507,959 - BPHYT_RS22065 0.71 +0.7 508,085 - BPHYT_RS22065 0.80 -0.6 508,268 - -0.4 508,315 - -0.1 508,381 + -0.2 508,466 - -0.1 508,573 - -0.1 508,676 - +5.4 508,685 + +0.4 508,788 - -0.3 508,788 - +0.3 509,377 + +0.6
Or see this region's nucleotide sequence