Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21805

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS21795 and BPHYT_RS21800 are separated by 39 nucleotidesBPHYT_RS21800 and BPHYT_RS21805 are separated by 200 nucleotidesBPHYT_RS21805 and BPHYT_RS21810 overlap by 4 nucleotides BPHYT_RS21795: BPHYT_RS21795 - membrane protein, at 445,991 to 447,550 _RS21795 BPHYT_RS21800: BPHYT_RS21800 - hypothetical protein, at 447,590 to 447,892 _RS21800 BPHYT_RS21805: BPHYT_RS21805 - transcriptional regulator, at 448,093 to 448,773 _RS21805 BPHYT_RS21810: BPHYT_RS21810 - histidine kinase, at 448,770 to 450,215 _RS21810 Position (kb) 448 449Strain fitness (log2 ratio) -1 0 1 2at 448.247 kb on + strand, within BPHYT_RS21805at 448.248 kb on - strand, within BPHYT_RS21805at 448.248 kb on - strand, within BPHYT_RS21805at 448.832 kb on + strandat 448.869 kb on + strandat 448.936 kb on + strand, within BPHYT_RS21810at 449.260 kb on - strand, within BPHYT_RS21810at 449.319 kb on + strand, within BPHYT_RS21810at 449.320 kb on - strand, within BPHYT_RS21810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
remove
448,247 + BPHYT_RS21805 0.23 -0.6
448,248 - BPHYT_RS21805 0.23 +1.8
448,248 - BPHYT_RS21805 0.23 +1.0
448,832 + -0.9
448,869 + +0.9
448,936 + BPHYT_RS21810 0.11 -1.5
449,260 - BPHYT_RS21810 0.34 -0.6
449,319 + BPHYT_RS21810 0.38 -0.1
449,320 - BPHYT_RS21810 0.38 +0.5

Or see this region's nucleotide sequence