Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21590 and BPHYT_RS21595 are separated by 161 nucleotides BPHYT_RS21595 and BPHYT_RS21600 are separated by 183 nucleotides BPHYT_RS21600 and BPHYT_RS21605 are separated by 106 nucleotides
BPHYT_RS21590: BPHYT_RS21590 - NmrA family transcriptional regulator, at 400,778 to 401,656
_RS21590
BPHYT_RS21595: BPHYT_RS21595 - TetR family transcriptional regulator, at 401,818 to 402,390
_RS21595
BPHYT_RS21600: BPHYT_RS21600 - 3-oxoacyl-ACP reductase, at 402,574 to 403,284
_RS21600
BPHYT_RS21605: BPHYT_RS21605 - NmrA family transcriptional regulator, at 403,391 to 404,143
_RS21605
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 401.784 kb on - strand at 401.791 kb on + strand at 402.110 kb on - strand, within BPHYT_RS21595 at 402.173 kb on - strand, within BPHYT_RS21595 at 402.461 kb on + strand at 402.522 kb on + strand at 402.792 kb on - strand, within BPHYT_RS21600 at 403.034 kb on + strand, within BPHYT_RS21600 at 403.035 kb on - strand, within BPHYT_RS21600 at 403.035 kb on - strand, within BPHYT_RS21600 at 403.035 kb on - strand, within BPHYT_RS21600 at 403.197 kb on - strand, within BPHYT_RS21600 at 403.290 kb on - strand at 403.290 kb on - strand at 403.349 kb on + strand at 403.350 kb on - strand at 403.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 401,784 - +0.4 401,791 + +1.4 402,110 - BPHYT_RS21595 0.51 -1.5 402,173 - BPHYT_RS21595 0.62 +1.7 402,461 + +0.2 402,522 + -0.2 402,792 - BPHYT_RS21600 0.31 -0.2 403,034 + BPHYT_RS21600 0.65 +0.7 403,035 - BPHYT_RS21600 0.65 +1.9 403,035 - BPHYT_RS21600 0.65 -0.3 403,035 - BPHYT_RS21600 0.65 -1.3 403,197 - BPHYT_RS21600 0.88 +1.1 403,290 - +0.9 403,290 - +0.2 403,349 + +0.2 403,350 - -0.1 403,380 + -1.1
Or see this region's nucleotide sequence